Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017659A_C01 KMC017659A_c01
(852 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB84390.1| P0529E05.5 [Oryza sativa (japonica cultivar-grou... 61 2e-08
ref|NP_187519.1| unknown protein; protein id: At3g09070.1 [Arabi... 52 1e-05
ref|NP_195737.1| putative protein; protein id: At5g01170.1 [Arab... 45 0.001
gb|AAO42234.1| unknown protein [Arabidopsis thaliana] 45 0.002
ref|NP_181342.1| hypothetical protein; protein id: At2g38070.1 [... 40 0.034
>dbj|BAB84390.1| P0529E05.5 [Oryza sativa (japonica cultivar-group)]
gi|20805191|dbj|BAB92860.1| P0529H11.33 [Oryza sativa
(japonica cultivar-group)]
Length = 969
Score = 61.2 bits (147), Expect = 2e-08
Identities = 38/67 (56%), Positives = 45/67 (66%), Gaps = 6/67 (8%)
Frame = -1
Query: 819 TGSLGTQSQRRNINGVQGNGNGKKGKDEFVLERNRSARYS-PSSVDNGLLRFYLAPM--- 652
+G LG S RR+ V NG+ + ++E VLERNRSARYS P VDNG+LRFYL PM
Sbjct: 556 SGGLG--SSRRS--HVDVNGSSARRREEHVLERNRSARYSPPGRVDNGMLRFYLTPMRSG 611
Query: 651 --GGGGR 637
GGGGR
Sbjct: 612 GGGGGGR 618
>ref|NP_187519.1| unknown protein; protein id: At3g09070.1 [Arabidopsis thaliana]
gi|5923672|gb|AAD56323.1|AC009326_10 unknown protein
[Arabidopsis thaliana]
Length = 685
Score = 51.6 bits (122), Expect = 1e-05
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Frame = -1
Query: 816 GSLGTQSQRRNIN-GVQGNGNGKKGKDEFVLERNRSARYSPSSVDNGLLRFYLAPM---- 652
G G + R N N + +G G K + RN+S+RYSP + +NG+L+FYL M
Sbjct: 594 GGGGPRMVRSNSNVSWRSSGGGSARKVNGLDRRNKSSRYSPKNGENGMLKFYLPHMKASR 653
Query: 651 ---GGGGRRNGSVNGRSN-QAQSIARSVIGLY 568
G GG G G +N SIARSV+ LY
Sbjct: 654 RMSGTGGAGGGGGGGWANSHGHSIARSVMRLY 685
>ref|NP_195737.1| putative protein; protein id: At5g01170.1 [Arabidopsis thaliana]
gi|11357834|pir||T45957 hypothetical protein F7J8.150 -
Arabidopsis thaliana gi|6759440|emb|CAB69845.1| putative
protein [Arabidopsis thaliana]
Length = 568
Score = 45.1 bits (105), Expect = 0.001
Identities = 35/110 (31%), Positives = 47/110 (41%), Gaps = 16/110 (14%)
Frame = -1
Query: 849 SVSWRNTQAFTGSLGTQSQRRNINGVQGNGNGKKGKDEFVLERNRSARYSPSSVDNGLLR 670
S SW + G G RR+ + V +G RN+S+RYS +NG+LR
Sbjct: 467 SESWPEMR--NGEGGGPKMRRSNSNVSWRSSGGGSA------RNKSSRYSSKDGENGMLR 518
Query: 669 FYLAPM----------------GGGGRRNGSVNGRSNQAQSIARSVIGLY 568
FYL PM GGGG + ++ SIAR V+ LY
Sbjct: 519 FYLTPMRRSWKTSGGSGGGGGGGGGGGWEKTAAKANSHGHSIARRVMRLY 568
>gb|AAO42234.1| unknown protein [Arabidopsis thaliana]
Length = 568
Score = 44.7 bits (104), Expect = 0.002
Identities = 35/110 (31%), Positives = 47/110 (41%), Gaps = 16/110 (14%)
Frame = -1
Query: 849 SVSWRNTQAFTGSLGTQSQRRNINGVQGNGNGKKGKDEFVLERNRSARYSPSSVDNGLLR 670
S SW + G G RR+ + V +G RN+S+RYS +NG+LR
Sbjct: 467 SESWPEMR--NGEGGGPKMRRSNSNVSWRSSGGGSA------RNKSSRYSSKDGENGVLR 518
Query: 669 FYLAPM----------------GGGGRRNGSVNGRSNQAQSIARSVIGLY 568
FYL PM GGGG + ++ SIAR V+ LY
Sbjct: 519 FYLTPMRRSWKTSGGSGGGGGGGGGGGWEKTAAKANSHGHSIARRVMRLY 568
>ref|NP_181342.1| hypothetical protein; protein id: At2g38070.1 [Arabidopsis
thaliana] gi|25370584|pir||E84800 hypothetical protein
At2g38070 [imported] - Arabidopsis thaliana
Length = 619
Score = 40.4 bits (93), Expect = 0.034
Identities = 32/90 (35%), Positives = 43/90 (47%)
Frame = -1
Query: 852 SSVSWRNTQAFTGSLGTQSQRRNINGVQGNGNGKKGKDEFVLERNRSARYSPSSVDNGLL 673
SSVSWR++ G+ G QR N V G +GKK S +NG+L
Sbjct: 542 SSVSWRSS----GTTGGGLQR---NSVDGYISGKK---------------KVSKAENGML 579
Query: 672 RFYLAPMGGGGRRNGSVNGRSNQAQSIARS 583
+FYL P G GRR GS N + ++ + S
Sbjct: 580 KFYLTP--GKGRRRGSGNSTAPTSRPVPAS 607
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 736,073,590
Number of Sequences: 1393205
Number of extensions: 16548302
Number of successful extensions: 37458
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 35968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37427
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44873636157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
