KMC017657A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC017657A_C01 KMC017657A_c01
ttgtagttttcttttcccttgttgggttacttttcaggaacaaaagtctcatggagtatt
gggttttcctatgtaCTCATTTAATTTGTGGCAACAACGTTGCTTTTCACAATTAATGGA
AACCAGAACATCATGTTGTGTTAAAGAATTGTAATTTTTTCAAAGAATTAACAAGCGCGC
AGGCACCCACAGACAAAAGATTATCTGGGAAATAGCTGGACCCTATTAACATGGCAAGAA
GATGCAGGATCCTGAAGGCAAGTGCAGAATGCATCCTCATCCTTAGGAAATGATGTTGGC
AGAGGATGATCAGGAATGACACCAACCTTGTCAATATCGGTGTGTGCCGGTGTCTCATAG
CGAGCAACCGTAACAACTAGACCAGAGCCGTCTGAGAGCTCAAAAACTGATTGGATTTTC
CTGCATAAAAATGTAGCTGATATTAGAAAAATAACACGTGGTATTCTTTGGATTGAACCA
AATCAAAAGTAACTACCCTTTTCCAAATGTAGGCTCTCCGAACAATACAGCCCTTTTGTT
ATCCTTCAATGCACCAGCTAATATTTCGCTTGCACTAGCAGTTCCCTTGTTTACCTGATA
CGGGCTCTCCATATTTAATTACTGATTTT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017657A_C01 KMC017657A_c01
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL99046.1|AF487528_1 D1 protease precursor [Nicotiana plumba... 128 3e-41
pir||JH0263 carboxy-terminal proteinase (EC 3.4.21.-) D1 precurs... 131 6e-30
emb|CAA62147.1| C-terminal processing protease of the D1 protein... 129 4e-29
ref|NP_193509.1| Photosystem Ii D1 carboxy-terminal protease; pr... 125 5e-28
emb|CAA10694.1| D1-processing protease [Arabidopsis thaliana] 125 5e-28
>gb|AAL99046.1|AF487528_1 D1 protease precursor [Nicotiana plumbaginifolia]
Length = 473
Score = 128 bits (322), Expect(2) = 3e-41
Identities = 57/72 (79%), Positives = 66/72 (91%)
Frame = -1
Query: 419 KIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPLPTSFPKDEDAFCTCLQDPAS 240
KIQSVF+LSDGSGL VTVARYETPAH DIDKVGVIPDHPLP SFPKD+++FC CL +PAS
Sbjct: 402 KIQSVFQLSDGSGLAVTVARYETPAHNDIDKVGVIPDHPLPASFPKDDESFCNCLLNPAS 461
Query: 239 SCHVNRVQLFPR 204
+CH+NRV+LF +
Sbjct: 462 ACHLNRVELFSK 473
Score = 62.0 bits (149), Expect(2) = 3e-41
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = -3
Query: 594 VNKGTASASEILAGALKDNKRAVLFGEPTFGKG 496
VNKGTASASEILAGALKDN RA LFGEPT+GKG
Sbjct: 369 VNKGTASASEILAGALKDNTRAQLFGEPTYGKG 401
>pir||JH0263 carboxy-terminal proteinase (EC 3.4.21.-) D1 precursor - spinach
gi|999435|dbj|BAA09134.1| C-terminal protease precursor
[Spinacia oleracea]
Length = 539
Score = 131 bits (330), Expect = 6e-30
Identities = 62/92 (67%), Positives = 74/92 (80%)
Frame = -1
Query: 479 GSIQRIPRVIFLISATFLCRKIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPL 300
G+++ R + T+ KIQSVFELSDGSGL VTVARYETPAHTDIDKVG+ PDHPL
Sbjct: 448 GALKDNKRAVVFGEPTYGKGKIQSVFELSDGSGLAVTVARYETPAHTDIDKVGIKPDHPL 507
Query: 299 PTSFPKDEDAFCTCLQDPASSCHVNRVQLFPR 204
P SFPKDE+ FCTC+QDP+S+C++N VQLF R
Sbjct: 508 PASFPKDENDFCTCVQDPSSTCYLNGVQLFSR 539
Score = 65.5 bits (158), Expect = 6e-10
Identities = 31/33 (93%), Positives = 33/33 (99%)
Frame = -3
Query: 594 VNKGTASASEILAGALKDNKRAVLFGEPTFGKG 496
VNKGTASASEILAGALKDNKRAV+FGEPT+GKG
Sbjct: 435 VNKGTASASEILAGALKDNKRAVVFGEPTYGKG 467
>emb|CAA62147.1| C-terminal processing protease of the D1 protein [Spinacia
oleracea]
Length = 539
Score = 129 bits (323), Expect = 4e-29
Identities = 61/92 (66%), Positives = 73/92 (79%)
Frame = -1
Query: 479 GSIQRIPRVIFLISATFLCRKIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPL 300
G+++ R + T+ KIQSVFELSDGSGL VTVARYETPAHTDI KVG+ PDHPL
Sbjct: 448 GALKDKKRAVVFGEPTYGKGKIQSVFELSDGSGLAVTVARYETPAHTDIGKVGIKPDHPL 507
Query: 299 PTSFPKDEDAFCTCLQDPASSCHVNRVQLFPR 204
P SFPKDE+ FCTC+QDP+S+C++N VQLF R
Sbjct: 508 PASFPKDENDFCTCVQDPSSTCYLNGVQLFSR 539
Score = 63.2 bits (152), Expect = 3e-09
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = -3
Query: 594 VNKGTASASEILAGALKDNKRAVLFGEPTFGKG 496
VNKGTASASEILAGALKD KRAV+FGEPT+GKG
Sbjct: 435 VNKGTASASEILAGALKDKKRAVVFGEPTYGKG 467
>ref|NP_193509.1| Photosystem Ii D1 carboxy-terminal protease; protein id:
At4g17740.1, supported by cDNA: gi_15809807, supported
by cDNA: gi_15983455 [Arabidopsis thaliana]
gi|7488163|pir||E71447 probable PSII D1 protein
processing enzyme - Arabidopsis thaliana
gi|2245133|emb|CAB10554.1| PSII D1 protein processing
enzyme [Arabidopsis thaliana] gi|7268527|emb|CAB78777.1|
PSII D1 protein processing enzyme [Arabidopsis thaliana]
gi|15809808|gb|AAL06832.1| AT4g17740/dl4905c
[Arabidopsis thaliana]
gi|15983456|gb|AAL11596.1|AF424602_1 AT4g17740/dl4905c
[Arabidopsis thaliana]
Length = 515
Score = 125 bits (314), Expect = 5e-28
Identities = 60/92 (65%), Positives = 72/92 (78%)
Frame = -1
Query: 479 GSIQRIPRVIFLISATFLCRKIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPL 300
G+++ R + T+ KIQSVFELSDGSGL VTVARYETPAHTDIDKVGV PDHPL
Sbjct: 424 GALKDNKRALVYGEPTYGKGKIQSVFELSDGSGLAVTVARYETPAHTDIDKVGVTPDHPL 483
Query: 299 PTSFPKDEDAFCTCLQDPASSCHVNRVQLFPR 204
P SFPKDE+AFC CL+DP ++C++N+ LF R
Sbjct: 484 PKSFPKDEEAFCGCLKDPTAACYLNQGLLFSR 515
Score = 63.2 bits (152), Expect = 3e-09
Identities = 29/33 (87%), Positives = 33/33 (99%)
Frame = -3
Query: 594 VNKGTASASEILAGALKDNKRAVLFGEPTFGKG 496
VNKGTASASEILAGALKDNKRA+++GEPT+GKG
Sbjct: 411 VNKGTASASEILAGALKDNKRALVYGEPTYGKG 443
>emb|CAA10694.1| D1-processing protease [Arabidopsis thaliana]
Length = 500
Score = 125 bits (314), Expect = 5e-28
Identities = 60/92 (65%), Positives = 72/92 (78%)
Frame = -1
Query: 479 GSIQRIPRVIFLISATFLCRKIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPL 300
G+++ R + T+ KIQSVFELSDGSGL VTVARYETPAHTDIDKVGV PDHPL
Sbjct: 409 GALKDNKRALVYGEPTYGKGKIQSVFELSDGSGLAVTVARYETPAHTDIDKVGVTPDHPL 468
Query: 299 PTSFPKDEDAFCTCLQDPASSCHVNRVQLFPR 204
P SFPKDE+AFC CL+DP ++C++N+ LF R
Sbjct: 469 PKSFPKDEEAFCGCLKDPTAACYLNQGLLFSR 500
Score = 63.2 bits (152), Expect = 3e-09
Identities = 29/33 (87%), Positives = 33/33 (99%)
Frame = -3
Query: 594 VNKGTASASEILAGALKDNKRAVLFGEPTFGKG 496
VNKGTASASEILAGALKDNKRA+++GEPT+GKG
Sbjct: 396 VNKGTASASEILAGALKDNKRALVYGEPTYGKG 428
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,684,020
Number of Sequences: 1393205
Number of extensions: 11980158
Number of successful extensions: 24177
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 23562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24173
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
SPDL078d12_f |
BP056847 |
1 |
408 |
2 |
SPD042d07_f |
BP047342 |
76 |
629 |
|
Lotus japonicus
Kazusa DNA Research Institute