KMC017657A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC017657A_C01 KMC017657A_c01
ttgtagttttcttttcccttgttgggttacttttcaggaacaaaagtctcatggagtatt
gggttttcctatgtaCTCATTTAATTTGTGGCAACAACGTTGCTTTTCACAATTAATGGA
AACCAGAACATCATGTTGTGTTAAAGAATTGTAATTTTTTCAAAGAATTAACAAGCGCGC
AGGCACCCACAGACAAAAGATTATCTGGGAAATAGCTGGACCCTATTAACATGGCAAGAA
GATGCAGGATCCTGAAGGCAAGTGCAGAATGCATCCTCATCCTTAGGAAATGATGTTGGC
AGAGGATGATCAGGAATGACACCAACCTTGTCAATATCGGTGTGTGCCGGTGTCTCATAG
CGAGCAACCGTAACAACTAGACCAGAGCCGTCTGAGAGCTCAAAAACTGATTGGATTTTC
CTGCATAAAAATGTAGCTGATATTAGAAAAATAACACGTGGTATTCTTTGGATTGAACCA
AATCAAAAGTAACTACCCTTTTCCAAATGTAGGCTCTCCGAACAATACAGCCCTTTTGTT
ATCCTTCAATGCACCAGCTAATATTTCGCTTGCACTAGCAGTTCCCTTGTTTACCTGATA
CGGGCTCTCCATATTTAATTACTGATTTT


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC017657A_C01 KMC017657A_c01
         (629 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL99046.1|AF487528_1 D1 protease precursor [Nicotiana plumba...   128  3e-41
pir||JH0263 carboxy-terminal proteinase (EC 3.4.21.-) D1 precurs...   131  6e-30
emb|CAA62147.1| C-terminal processing protease of the D1 protein...   129  4e-29
ref|NP_193509.1| Photosystem Ii D1 carboxy-terminal protease; pr...   125  5e-28
emb|CAA10694.1| D1-processing protease [Arabidopsis thaliana]         125  5e-28

>gb|AAL99046.1|AF487528_1 D1 protease precursor [Nicotiana plumbaginifolia]
          Length = 473

 Score =  128 bits (322), Expect(2) = 3e-41
 Identities = 57/72 (79%), Positives = 66/72 (91%)
 Frame = -1

Query: 419 KIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPLPTSFPKDEDAFCTCLQDPAS 240
           KIQSVF+LSDGSGL VTVARYETPAH DIDKVGVIPDHPLP SFPKD+++FC CL +PAS
Sbjct: 402 KIQSVFQLSDGSGLAVTVARYETPAHNDIDKVGVIPDHPLPASFPKDDESFCNCLLNPAS 461

Query: 239 SCHVNRVQLFPR 204
           +CH+NRV+LF +
Sbjct: 462 ACHLNRVELFSK 473

 Score = 62.0 bits (149), Expect(2) = 3e-41
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -3

Query: 594 VNKGTASASEILAGALKDNKRAVLFGEPTFGKG 496
           VNKGTASASEILAGALKDN RA LFGEPT+GKG
Sbjct: 369 VNKGTASASEILAGALKDNTRAQLFGEPTYGKG 401

>pir||JH0263 carboxy-terminal proteinase (EC 3.4.21.-) D1 precursor - spinach
           gi|999435|dbj|BAA09134.1| C-terminal protease precursor
           [Spinacia oleracea]
          Length = 539

 Score =  131 bits (330), Expect = 6e-30
 Identities = 62/92 (67%), Positives = 74/92 (80%)
 Frame = -1

Query: 479 GSIQRIPRVIFLISATFLCRKIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPL 300
           G+++   R +     T+   KIQSVFELSDGSGL VTVARYETPAHTDIDKVG+ PDHPL
Sbjct: 448 GALKDNKRAVVFGEPTYGKGKIQSVFELSDGSGLAVTVARYETPAHTDIDKVGIKPDHPL 507

Query: 299 PTSFPKDEDAFCTCLQDPASSCHVNRVQLFPR 204
           P SFPKDE+ FCTC+QDP+S+C++N VQLF R
Sbjct: 508 PASFPKDENDFCTCVQDPSSTCYLNGVQLFSR 539

 Score = 65.5 bits (158), Expect = 6e-10
 Identities = 31/33 (93%), Positives = 33/33 (99%)
 Frame = -3

Query: 594 VNKGTASASEILAGALKDNKRAVLFGEPTFGKG 496
           VNKGTASASEILAGALKDNKRAV+FGEPT+GKG
Sbjct: 435 VNKGTASASEILAGALKDNKRAVVFGEPTYGKG 467

>emb|CAA62147.1| C-terminal processing protease of the D1 protein [Spinacia
           oleracea]
          Length = 539

 Score =  129 bits (323), Expect = 4e-29
 Identities = 61/92 (66%), Positives = 73/92 (79%)
 Frame = -1

Query: 479 GSIQRIPRVIFLISATFLCRKIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPL 300
           G+++   R +     T+   KIQSVFELSDGSGL VTVARYETPAHTDI KVG+ PDHPL
Sbjct: 448 GALKDKKRAVVFGEPTYGKGKIQSVFELSDGSGLAVTVARYETPAHTDIGKVGIKPDHPL 507

Query: 299 PTSFPKDEDAFCTCLQDPASSCHVNRVQLFPR 204
           P SFPKDE+ FCTC+QDP+S+C++N VQLF R
Sbjct: 508 PASFPKDENDFCTCVQDPSSTCYLNGVQLFSR 539

 Score = 63.2 bits (152), Expect = 3e-09
 Identities = 30/33 (90%), Positives = 32/33 (96%)
 Frame = -3

Query: 594 VNKGTASASEILAGALKDNKRAVLFGEPTFGKG 496
           VNKGTASASEILAGALKD KRAV+FGEPT+GKG
Sbjct: 435 VNKGTASASEILAGALKDKKRAVVFGEPTYGKG 467

>ref|NP_193509.1| Photosystem Ii D1 carboxy-terminal protease; protein id:
           At4g17740.1, supported by cDNA: gi_15809807, supported
           by cDNA: gi_15983455 [Arabidopsis thaliana]
           gi|7488163|pir||E71447 probable PSII D1 protein
           processing enzyme - Arabidopsis thaliana
           gi|2245133|emb|CAB10554.1| PSII D1 protein processing
           enzyme [Arabidopsis thaliana] gi|7268527|emb|CAB78777.1|
           PSII D1 protein processing enzyme [Arabidopsis thaliana]
           gi|15809808|gb|AAL06832.1| AT4g17740/dl4905c
           [Arabidopsis thaliana]
           gi|15983456|gb|AAL11596.1|AF424602_1 AT4g17740/dl4905c
           [Arabidopsis thaliana]
          Length = 515

 Score =  125 bits (314), Expect = 5e-28
 Identities = 60/92 (65%), Positives = 72/92 (78%)
 Frame = -1

Query: 479 GSIQRIPRVIFLISATFLCRKIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPL 300
           G+++   R +     T+   KIQSVFELSDGSGL VTVARYETPAHTDIDKVGV PDHPL
Sbjct: 424 GALKDNKRALVYGEPTYGKGKIQSVFELSDGSGLAVTVARYETPAHTDIDKVGVTPDHPL 483

Query: 299 PTSFPKDEDAFCTCLQDPASSCHVNRVQLFPR 204
           P SFPKDE+AFC CL+DP ++C++N+  LF R
Sbjct: 484 PKSFPKDEEAFCGCLKDPTAACYLNQGLLFSR 515

 Score = 63.2 bits (152), Expect = 3e-09
 Identities = 29/33 (87%), Positives = 33/33 (99%)
 Frame = -3

Query: 594 VNKGTASASEILAGALKDNKRAVLFGEPTFGKG 496
           VNKGTASASEILAGALKDNKRA+++GEPT+GKG
Sbjct: 411 VNKGTASASEILAGALKDNKRALVYGEPTYGKG 443

>emb|CAA10694.1| D1-processing protease [Arabidopsis thaliana]
          Length = 500

 Score =  125 bits (314), Expect = 5e-28
 Identities = 60/92 (65%), Positives = 72/92 (78%)
 Frame = -1

Query: 479 GSIQRIPRVIFLISATFLCRKIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPL 300
           G+++   R +     T+   KIQSVFELSDGSGL VTVARYETPAHTDIDKVGV PDHPL
Sbjct: 409 GALKDNKRALVYGEPTYGKGKIQSVFELSDGSGLAVTVARYETPAHTDIDKVGVTPDHPL 468

Query: 299 PTSFPKDEDAFCTCLQDPASSCHVNRVQLFPR 204
           P SFPKDE+AFC CL+DP ++C++N+  LF R
Sbjct: 469 PKSFPKDEEAFCGCLKDPTAACYLNQGLLFSR 500

 Score = 63.2 bits (152), Expect = 3e-09
 Identities = 29/33 (87%), Positives = 33/33 (99%)
 Frame = -3

Query: 594 VNKGTASASEILAGALKDNKRAVLFGEPTFGKG 496
           VNKGTASASEILAGALKDNKRA+++GEPT+GKG
Sbjct: 396 VNKGTASASEILAGALKDNKRALVYGEPTYGKG 428

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,684,020
Number of Sequences: 1393205
Number of extensions: 11980158
Number of successful extensions: 24177
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 23562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24173
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPDL078d12_f BP056847 1 408
2 SPD042d07_f BP047342 76 629




Lotus japonicus
Kazusa DNA Research Institute