Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017616A_C01 KMC017616A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC22313.1| putative glycosyl hydrolase family protein [Oryz... 140 8e-33
ref|NP_193451.1| glycosyl hydrolase family 17; protein id: At4g1... 129 2e-29
dbj|BAC42089.1| unknown protein [Arabidopsis thaliana] 129 2e-29
ref|NP_200656.1| glycosyl hydrolase family 17; protein id: At5g5... 99 3e-20
dbj|BAB10263.1| beta-1,3-glucanase-like [Arabidopsis thaliana] g... 99 3e-20
>dbj|BAC22313.1| putative glycosyl hydrolase family protein [Oryza sativa (japonica
cultivar-group)]
Length = 516
Score = 140 bits (354), Expect = 8e-33
Identities = 63/101 (62%), Positives = 79/101 (77%), Gaps = 8/101 (7%)
Frame = -3
Query: 564 NHMRIACSVADCTTLNYGGSCNEIGEKGNVSYAFNSYYQLRMQDSQSCNFDGLGMITFLD 385
NH+++AC++ADCTTL YGGSCN IGEKGN+SYAFNSYYQLR QD+QSC+FDGLGMIT+LD
Sbjct: 407 NHLKLACTMADCTTLYYGGSCNAIGEKGNISYAFNSYYQLRKQDAQSCDFDGLGMITYLD 466
Query: 384 PSVGDCRFLVGVG--------SDSSTSQTTYQWWVVVLLLI 286
PS+GDCRFLVG+ S S+ + W++ L+I
Sbjct: 467 PSIGDCRFLVGIDDSRTSTIYSSGDCSRRRFGLWILAFLVI 507
>ref|NP_193451.1| glycosyl hydrolase family 17; protein id: At4g17180.1 [Arabidopsis
thaliana] gi|7488109|pir||F71440 probable glucanase -
Arabidopsis thaliana gi|2245077|emb|CAB10499.1|
glucanase like protein [Arabidopsis thaliana]
gi|7268469|emb|CAB80989.1| glucanase like protein
[Arabidopsis thaliana]
Length = 502
Score = 129 bits (325), Expect = 2e-29
Identities = 59/81 (72%), Positives = 71/81 (86%), Gaps = 3/81 (3%)
Frame = -3
Query: 564 NHMRIACSVADCTTLNYGGSCNEIGEKGNVSYAFNSYYQLRMQDSQSCNFDGLGMITFLD 385
+H+R+ACS ADCTTLN GGSC+++GEK N+SYAFNSYYQ++MQ +SC+FDGLGM+TFLD
Sbjct: 400 DHLRLACSEADCTTLNDGGSCSQLGEKDNISYAFNSYYQMQMQHEKSCDFDGLGMVTFLD 459
Query: 384 PSVGDCRFLVGV---GSDSST 331
PSVGDCRFLVGV G SST
Sbjct: 460 PSVGDCRFLVGVTDIGLSSST 480
>dbj|BAC42089.1| unknown protein [Arabidopsis thaliana]
Length = 475
Score = 129 bits (325), Expect = 2e-29
Identities = 59/81 (72%), Positives = 71/81 (86%), Gaps = 3/81 (3%)
Frame = -3
Query: 564 NHMRIACSVADCTTLNYGGSCNEIGEKGNVSYAFNSYYQLRMQDSQSCNFDGLGMITFLD 385
+H+R+ACS ADCTTLN GGSC+++GEK N+SYAFNSYYQ++MQ +SC+FDGLGM+TFLD
Sbjct: 373 DHLRLACSEADCTTLNDGGSCSQLGEKDNISYAFNSYYQMQMQHEKSCDFDGLGMVTFLD 432
Query: 384 PSVGDCRFLVGV---GSDSST 331
PSVGDCRFLVGV G SST
Sbjct: 433 PSVGDCRFLVGVTDIGLSSST 453
>ref|NP_200656.1| glycosyl hydrolase family 17; protein id: At5g58480.1 [Arabidopsis
thaliana]
Length = 465
Score = 99.4 bits (246), Expect = 3e-20
Identities = 49/95 (51%), Positives = 66/95 (68%), Gaps = 2/95 (2%)
Frame = -3
Query: 549 ACSVADCTTLNYGGSCNEIGEKGNVSYAFNSYYQLRMQDSQSCNFDGLGMITFLDPSVGD 370
AC+VADCT++ GGSC+ I GNVSYAFNS YQ ++SCNF GLG+IT +DPS +
Sbjct: 371 ACAVADCTSILPGGSCSGIRWPGNVSYAFNSLYQQNDHSAESCNFGGLGLITTVDPSEDN 430
Query: 369 CRFLVGVGSDSSTSQTT--YQWWVVVLLLILHGTF 271
CRF + + + S+SQT +Q W ++LL +L G F
Sbjct: 431 CRFSIQLDTSHSSSQTPNFFQSWPLLLLFLLSGLF 465
>dbj|BAB10263.1| beta-1,3-glucanase-like [Arabidopsis thaliana]
gi|28393035|gb|AAO41952.1| putative glycosyl hydrolase
family 17 protein [Arabidopsis thaliana]
gi|28827612|gb|AAO50650.1| putative glycosyl hydrolase
family 17 protein [Arabidopsis thaliana]
Length = 476
Score = 99.4 bits (246), Expect = 3e-20
Identities = 49/95 (51%), Positives = 66/95 (68%), Gaps = 2/95 (2%)
Frame = -3
Query: 549 ACSVADCTTLNYGGSCNEIGEKGNVSYAFNSYYQLRMQDSQSCNFDGLGMITFLDPSVGD 370
AC+VADCT++ GGSC+ I GNVSYAFNS YQ ++SCNF GLG+IT +DPS +
Sbjct: 382 ACAVADCTSILPGGSCSGIRWPGNVSYAFNSLYQQNDHSAESCNFGGLGLITTVDPSEDN 441
Query: 369 CRFLVGVGSDSSTSQTT--YQWWVVVLLLILHGTF 271
CRF + + + S+SQT +Q W ++LL +L G F
Sbjct: 442 CRFSIQLDTSHSSSQTPNFFQSWPLLLLFLLSGLF 476
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,228,768
Number of Sequences: 1393205
Number of extensions: 9207536
Number of successful extensions: 21108
Number of sequences better than 10.0: 133
Number of HSP's better than 10.0 without gapping: 20358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21074
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
