Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017588A_C01 KMC017588A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC20365.1| phosphoenolpyruvate carboxylase [Lotus japonicus] 141 1e-67
emb|CAC28225.1| phosphoenolpyruvate carboxylase [Sesbania rostrata] 132 2e-62
sp|Q02909|CAP1_SOYBN Phosphoenolpyruvate carboxylase, housekeepi... 132 2e-61
sp|Q02735|CAPP_MEDSA Phosphoenolpyruvate carboxylase (PEPCase) g... 135 1e-60
gb|AAO15570.1|AF459644_1 phosphoenolpyruvate carboxylase [Lupinu... 131 2e-60
>dbj|BAC20365.1| phosphoenolpyruvate carboxylase [Lotus japonicus]
Length = 967
Score = 141 bits (356), Expect(3) = 1e-67
Identities = 70/73 (95%), Positives = 73/73 (99%)
Frame = +3
Query: 126 VDAQLRRLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYERKH 305
+DAQLR+LVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDL+ETVQEVYELSAEYERKH
Sbjct: 12 IDAQLRQLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLRETVQEVYELSAEYERKH 71
Query: 306 EPQRLEVLGNLIT 344
EPQRLEVLGNLIT
Sbjct: 72 EPQRLEVLGNLIT 84
Score = 132 bits (333), Expect(3) = 1e-67
Identities = 68/70 (97%), Positives = 68/70 (97%)
Frame = +1
Query: 349 LDAGHSIVVAKSFAHMLNLANLAEEVQIAHRRRIKLKKGDFADEGNATTESDIEETFKKL 528
LDAG SIVVAKSFAHMLNLANLAEEVQIAHRRRIKLKKGDFADEGNATTESDIEETFKKL
Sbjct: 86 LDAGDSIVVAKSFAHMLNLANLAEEVQIAHRRRIKLKKGDFADEGNATTESDIEETFKKL 145
Query: 529 VXEMKKSPQE 558
V EMKKSPQE
Sbjct: 146 VGEMKKSPQE 155
Score = 25.0 bits (53), Expect(3) = 1e-67
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 92 MANRNLEKMAS 124
MANRNLEKMAS
Sbjct: 1 MANRNLEKMAS 11
>emb|CAC28225.1| phosphoenolpyruvate carboxylase [Sesbania rostrata]
Length = 961
Score = 132 bits (333), Expect(3) = 2e-62
Identities = 66/73 (90%), Positives = 70/73 (95%)
Frame = +3
Query: 126 VDAQLRRLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYERKH 305
+DAQLR LVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYE KH
Sbjct: 12 IDAQLRLLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKH 71
Query: 306 EPQRLEVLGNLIT 344
+P++LE LGNLIT
Sbjct: 72 DPKKLEELGNLIT 84
Score = 124 bits (311), Expect(3) = 2e-62
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +1
Query: 349 LDAGHSIVVAKSFAHMLNLANLAEEVQIAHRRRIKLKKGDFADEGNATTESDIEETFKKL 528
LDAG SIVVAKSF+HMLNLANLAEEVQIAHRRR KLKKGDFADE NATTESDIEET KKL
Sbjct: 86 LDAGDSIVVAKSFSHMLNLANLAEEVQIAHRRRNKLKKGDFADESNATTESDIEETLKKL 145
Query: 529 VXEMKKSPQE 558
V EMKKSPQE
Sbjct: 146 VGEMKKSPQE 155
Score = 25.0 bits (53), Expect(3) = 2e-62
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 92 MANRNLEKMAS 124
MANRNLEKMAS
Sbjct: 1 MANRNLEKMAS 11
>sp|Q02909|CAP1_SOYBN Phosphoenolpyruvate carboxylase, housekeeping isozyme (PEPCase)
gi|320128|pir||S28428 phosphoenolpyruvate carboxylase
(EC 4.1.1.31) - soybean gi|218267|dbj|BAA01560.1|
phosphoenolpyruvate carboxylase [Glycine max]
Length = 967
Score = 132 bits (333), Expect(3) = 2e-61
Identities = 66/73 (90%), Positives = 70/73 (95%)
Frame = +3
Query: 126 VDAQLRRLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYERKH 305
+DAQLR LVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYE KH
Sbjct: 12 IDAQLRLLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKH 71
Query: 306 EPQRLEVLGNLIT 344
+P++LE LGNLIT
Sbjct: 72 DPKKLEELGNLIT 84
Score = 120 bits (302), Expect(3) = 2e-61
Identities = 62/70 (88%), Positives = 64/70 (90%)
Frame = +1
Query: 349 LDAGHSIVVAKSFAHMLNLANLAEEVQIAHRRRIKLKKGDFADEGNATTESDIEETFKKL 528
LDAG SIVVAKSF+HMLNLANLAEEVQIAH RR KLKKGDFADE NATTESDIEET KKL
Sbjct: 86 LDAGDSIVVAKSFSHMLNLANLAEEVQIAHSRRNKLKKGDFADENNATTESDIEETLKKL 145
Query: 529 VXEMKKSPQE 558
V +MKKSPQE
Sbjct: 146 VVDMKKSPQE 155
Score = 25.0 bits (53), Expect(3) = 2e-61
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 92 MANRNLEKMAS 124
MANRNLEKMAS
Sbjct: 1 MANRNLEKMAS 11
>sp|Q02735|CAPP_MEDSA Phosphoenolpyruvate carboxylase (PEPCase) gi|280394|pir||S26235
phosphoenolpyruvate carboxylase (EC 4.1.1.31) - alfalfa
gi|166416|gb|AAB46618.1| phosphoenolpyruvate carboxylase
[Medicago sativa] gi|1146155|gb|AAB41903.1|
phosphoenolpyruvate carboxylase [Medicago sativa]
Length = 966
Score = 135 bits (340), Expect(2) = 1e-60
Identities = 65/75 (86%), Positives = 73/75 (96%)
Frame = +3
Query: 126 VDAQLRRLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYERKH 305
+DAQLR+LVPAKVSEDDKL+EYDALLLDRFLDILQDLHGEDLK++VQEVYELSAEYERKH
Sbjct: 11 IDAQLRQLVPAKVSEDDKLIEYDALLLDRFLDILQDLHGEDLKDSVQEVYELSAEYERKH 70
Query: 306 EPQRLEVLGNLITMF 350
+P++LE LGNLIT F
Sbjct: 71 DPKKLEELGNLITSF 85
Score = 119 bits (299), Expect(2) = 1e-60
Identities = 61/69 (88%), Positives = 63/69 (90%)
Frame = +1
Query: 352 DAGHSIVVAKSFAHMLNLANLAEEVQIAHRRRIKLKKGDFADEGNATTESDIEETFKKLV 531
DAG SIVVAKSF+HMLNLANLAEEVQIAHRRR KLKKGDF DE NATTESDIEET KKLV
Sbjct: 86 DAGDSIVVAKSFSHMLNLANLAEEVQIAHRRRNKLKKGDFRDESNATTESDIEETLKKLV 145
Query: 532 XEMKKSPQE 558
+MKKSPQE
Sbjct: 146 FDMKKSPQE 154
>gb|AAO15570.1|AF459644_1 phosphoenolpyruvate carboxylase [Lupinus albus]
Length = 967
Score = 131 bits (329), Expect(3) = 2e-60
Identities = 63/73 (86%), Positives = 70/73 (95%)
Frame = +3
Query: 126 VDAQLRRLVPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYERKH 305
+DAQLR+L PAKVSEDDKLVEYDALLLDRFLDILQDLHGED+KETVQE+YELSAEYE KH
Sbjct: 12 IDAQLRQLAPAKVSEDDKLVEYDALLLDRFLDILQDLHGEDMKETVQEIYELSAEYEGKH 71
Query: 306 EPQRLEVLGNLIT 344
+P++LE LGNLIT
Sbjct: 72 DPKKLEELGNLIT 84
Score = 119 bits (298), Expect(3) = 2e-60
Identities = 60/70 (85%), Positives = 64/70 (90%)
Frame = +1
Query: 349 LDAGHSIVVAKSFAHMLNLANLAEEVQIAHRRRIKLKKGDFADEGNATTESDIEETFKKL 528
LDAG SIV AK+F+HMLNLANLAEEVQIAHRRR LKKGDFADE NATTESDIEETFK+L
Sbjct: 86 LDAGDSIVFAKAFSHMLNLANLAEEVQIAHRRRNNLKKGDFADENNATTESDIEETFKRL 145
Query: 529 VXEMKKSPQE 558
V E+KKSPQE
Sbjct: 146 VRELKKSPQE 155
Score = 25.0 bits (53), Expect(3) = 2e-60
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 92 MANRNLEKMAS 124
MANRNLEKMAS
Sbjct: 1 MANRNLEKMAS 11
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,554,481
Number of Sequences: 1393205
Number of extensions: 11185517
Number of successful extensions: 81232
Number of sequences better than 10.0: 152
Number of HSP's better than 10.0 without gapping: 44511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73065
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
