Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017566A_C01 KMC017566A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF26998.1|AC016827_9 putative mudrA protein [Arabidopsis tha... 85 6e-16
ref|NP_187350.2| putative mudrA protein; protein id: At3g06940.1... 85 6e-16
ref|NP_187236.1| unknown protein; protein id: At3g05850.1 [Arabi... 79 4e-14
dbj|BAB10320.1| mutator-like transposase-like protein [Arabidops... 79 4e-14
ref|NP_568331.1| Expressed protein; protein id: At5g16505.1, sup... 54 1e-06
>gb|AAF26998.1|AC016827_9 putative mudrA protein [Arabidopsis thaliana]
Length = 609
Score = 84.7 bits (208), Expect = 6e-16
Identities = 37/46 (80%), Positives = 41/46 (88%)
Frame = -3
Query: 497 VTVTPPPTKRPPGRPKMKPVESIDMIKRQLQCSKCKELGHNKKTCK 360
V VTPPPT+R PGRPK+K VE +DM+KRQLQCSKCK LGHNKKTCK
Sbjct: 562 VCVTPPPTRRTPGRPKIKKVEPLDMMKRQLQCSKCKGLGHNKKTCK 607
>ref|NP_187350.2| putative mudrA protein; protein id: At3g06940.1, supported by cDNA:
gi_17380907, supported by cDNA: gi_18087532, supported
by cDNA: gi_20855901 [Arabidopsis thaliana]
gi|17380908|gb|AAL36266.1| putative mudrA protein
[Arabidopsis thaliana]
gi|18087533|gb|AAL58900.1|AF462806_1 AT3g06940/F17A9_9
[Arabidopsis thaliana] gi|20855902|gb|AAM26637.1|
AT3g06940/F17A9_9 [Arabidopsis thaliana]
gi|28393919|gb|AAO42367.1| putative mudrA protein
[Arabidopsis thaliana]
Length = 749
Score = 84.7 bits (208), Expect = 6e-16
Identities = 37/46 (80%), Positives = 41/46 (88%)
Frame = -3
Query: 497 VTVTPPPTKRPPGRPKMKPVESIDMIKRQLQCSKCKELGHNKKTCK 360
V VTPPPT+R PGRPK+K VE +DM+KRQLQCSKCK LGHNKKTCK
Sbjct: 702 VCVTPPPTRRTPGRPKIKKVEPLDMMKRQLQCSKCKGLGHNKKTCK 747
>ref|NP_187236.1| unknown protein; protein id: At3g05850.1 [Arabidopsis thaliana]
gi|6714398|gb|AAF26087.1|AC012393_13 unknown protein
[Arabidopsis thaliana]
Length = 777
Score = 78.6 bits (192), Expect = 4e-14
Identities = 34/50 (68%), Positives = 41/50 (82%)
Frame = -3
Query: 500 AVTVTPPPTKRPPGRPKMKPVESIDMIKRQLQCSKCKELGHNKKTCKNSL 351
AVTVTPPPT+RPPGRP K + +++KRQLQCS+CK LGHNK TCK+ L
Sbjct: 725 AVTVTPPPTRRPPGRPPKKKTPAEEVMKRQLQCSRCKGLGHNKSTCKDYL 774
>dbj|BAB10320.1| mutator-like transposase-like protein [Arabidopsis thaliana]
gi|22531088|gb|AAM97048.1| unknown protein [Arabidopsis
thaliana] gi|23197938|gb|AAN15496.1| unknown protein
[Arabidopsis thaliana]
Length = 757
Score = 78.6 bits (192), Expect = 4e-14
Identities = 36/47 (76%), Positives = 39/47 (82%), Gaps = 1/47 (2%)
Frame = -3
Query: 497 VTVTPPPTK-RPPGRPKMKPVESIDMIKRQLQCSKCKELGHNKKTCK 360
V+VTPPPT+ PPGRPK K VE +DM KRQLQCS CK LGHNKKTCK
Sbjct: 708 VSVTPPPTRLTPPGRPKSKQVEPLDMFKRQLQCSNCKGLGHNKKTCK 754
>ref|NP_568331.1| Expressed protein; protein id: At5g16505.1, supported by cDNA:
gi_16648944, supported by cDNA: gi_20259875 [Arabidopsis
thaliana] gi|9759134|dbj|BAB09619.1| mutator-like
transposase-like protein [Arabidopsis thaliana]
gi|16648945|gb|AAL24324.1| mutator-like transposase-like
protein [Arabidopsis thaliana]
gi|20259876|gb|AAM13285.1| mutator-like transposase-like
protein [Arabidopsis thaliana]
Length = 597
Score = 53.5 bits (127), Expect = 1e-06
Identities = 27/59 (45%), Positives = 39/59 (65%), Gaps = 5/59 (8%)
Frame = -3
Query: 524 NEGELA---LPAVTVTPPPTKRPPGRPKMKPV--ESIDMIKRQLQCSKCKELGHNKKTC 363
+EGE A + ++ + PP T+RPPGRPK K V E++ KR +QC +C LGH++K C
Sbjct: 535 DEGEEAGGGVESLRIRPPKTRRPPGRPKKKVVRVENLKRPKRIVQCGRCHLLGHSQKKC 593
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,031,446
Number of Sequences: 1393205
Number of extensions: 8144188
Number of successful extensions: 28218
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 24742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27977
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
