Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017543A_C01 KMC017543A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL57624.1| AT3g58640/F14P22_230 [Arabidopsis thaliana] 61 1e-08
gb|AAM98119.1| unknown protein [Arabidopsis thaliana] 61 1e-08
ref|NP_567072.1| putative protein; protein id: At3g58640.1, supp... 61 1e-08
pir||T45684 hypothetical protein F14P22.230 - Arabidopsis thalia... 61 1e-08
ref|NP_524199.1| Polycomb CG32443-PA gi|129718|sp|P26017|PC_DROM... 41 0.013
>gb|AAL57624.1| AT3g58640/F14P22_230 [Arabidopsis thaliana]
Length = 471
Score = 61.2 bits (147), Expect = 1e-08
Identities = 29/46 (63%), Positives = 34/46 (73%)
Frame = +3
Query: 462 MEVTRVDAGPVAQRPSNVSWWPSDFVEKFGSVSLDSQDETLNNKES 599
M T DAGP Q PSN +WWPS+FVEKFGSV L SQ+ET + K+S
Sbjct: 1 MGETGDDAGPSEQGPSNQTWWPSEFVEKFGSVYLGSQEETSSTKDS 46
>gb|AAM98119.1| unknown protein [Arabidopsis thaliana]
Length = 809
Score = 61.2 bits (147), Expect = 1e-08
Identities = 29/46 (63%), Positives = 34/46 (73%)
Frame = +3
Query: 462 MEVTRVDAGPVAQRPSNVSWWPSDFVEKFGSVSLDSQDETLNNKES 599
M T DAGP Q PSN +WWPS+FVEKFGSV L SQ+ET + K+S
Sbjct: 1 MGETGDDAGPSEQGPSNQTWWPSEFVEKFGSVYLGSQEETSSTKDS 46
>ref|NP_567072.1| putative protein; protein id: At3g58640.1, supported by cDNA:
gi_15146175 [Arabidopsis thaliana]
gi|15146176|gb|AAK83572.1| AT3g58640/F14P22_230
[Arabidopsis thaliana] gi|22655030|gb|AAM98106.1|
At3g58640/F14P22_230 [Arabidopsis thaliana]
Length = 809
Score = 61.2 bits (147), Expect = 1e-08
Identities = 29/46 (63%), Positives = 34/46 (73%)
Frame = +3
Query: 462 MEVTRVDAGPVAQRPSNVSWWPSDFVEKFGSVSLDSQDETLNNKES 599
M T DAGP Q PSN +WWPS+FVEKFGSV L SQ+ET + K+S
Sbjct: 1 MGETGDDAGPSEQGPSNQTWWPSEFVEKFGSVYLGSQEETSSTKDS 46
>pir||T45684 hypothetical protein F14P22.230 - Arabidopsis thaliana
gi|6735381|emb|CAB68202.1| putative protein [Arabidopsis
thaliana]
Length = 816
Score = 61.2 bits (147), Expect = 1e-08
Identities = 29/46 (63%), Positives = 34/46 (73%)
Frame = +3
Query: 462 MEVTRVDAGPVAQRPSNVSWWPSDFVEKFGSVSLDSQDETLNNKES 599
M T DAGP Q PSN +WWPS+FVEKFGSV L SQ+ET + K+S
Sbjct: 1 MGETGDDAGPSEQGPSNQTWWPSEFVEKFGSVYLGSQEETSSTKDS 46
>ref|NP_524199.1| Polycomb CG32443-PA gi|129718|sp|P26017|PC_DROME Polycomb protein
gi|103306|pir||A38565 polycomb (Pc) protein - fruit fly
(Drosophila melanogaster) gi|603986|emb|CAA39229.1|
polycomb protein [Drosophila melanogaster]
gi|7296420|gb|AAF51707.1| CG32443-PA [Drosophila
melanogaster] gi|17946416|gb|AAL49241.1| RE66837p
[Drosophila melanogaster]
Length = 390
Score = 40.8 bits (94), Expect = 0.013
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +3
Query: 3 DSHSLTTTSSSHNTQQNLSLFLSYTLTPTNPNKAHRFFLHIFHHFKTQHNS---SKSKSN 173
D+H TT+S++H+ + + K H H HH K++ NS S+S
Sbjct: 113 DTHQATTSSATHDKE-------------SKKEKKHHHHHHHHHHIKSERNSGRRSESPLT 159
Query: 174 HHHHH 188
HHHHH
Sbjct: 160 HHHHH 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,231,395
Number of Sequences: 1393205
Number of extensions: 11507002
Number of successful extensions: 50525
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 39953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46510
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
