Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017542A_C01 KMC017542A_c01
(620 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_602705.1| 168 kDa surface-layer protein precursor [Fusoba... 32 6.7
ref|XP_231251.1| similar to rab6 GTPase activating protein (GAP ... 32 8.7
>ref|NP_602705.1| 168 kDa surface-layer protein precursor [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586] gi|19713157|gb|AAL94004.1|
outer membrane protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 1487
Score = 32.0 bits (71), Expect = 6.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 11 HAWYSLKAFTLANGIITTNYLPLDDKYSTTI*KYSSNKVQTQKGSGTL 154
H W ++ A + NGI +Y+ DKY+ + K + + ++ K SG +
Sbjct: 249 HQWRTINATSTGNGISNLSYITTVDKYTYSEDKVNGSYIKNIKNSGII 296
>ref|XP_231251.1| similar to rab6 GTPase activating protein (GAP and
centrosome-associated) [Homo sapiens] [Rattus
norvegicus]
Length = 1031
Score = 31.6 bits (70), Expect = 8.7
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -1
Query: 572 LIGIQCSVNFHIIYYFPKRRYELMTCEVFG 483
L+G+ C V + Y+P E MTC+VFG
Sbjct: 759 LVGVSCLVPSLSLLYYPLPMEEAMTCQVFG 788
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,761,966
Number of Sequences: 1393205
Number of extensions: 10731463
Number of successful extensions: 24503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24497
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
