Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017537A_C02 KMC017537A_c02
(527 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195531.1| hypothetical protein; protein id: At4g38180.1 [... 37 0.19
ref|NP_195530.1| hypothetical protein; protein id: At4g38170.1 [... 36 0.32
ref|NP_078438.1| glutamyl-tRNA synthetase [Ureaplasma urealyticu... 31 7.9
>ref|NP_195531.1| hypothetical protein; protein id: At4g38180.1 [Arabidopsis
thaliana] gi|7485859|pir||T05645 hypothetical protein
F20D10.300 - Arabidopsis thaliana
gi|4467124|emb|CAB37558.1| hypothetical protein
[Arabidopsis thaliana] gi|7270802|emb|CAB80483.1|
hypothetical protein [Arabidopsis thaliana]
gi|22531237|gb|AAM97122.1| unknown protein [Arabidopsis
thaliana]
Length = 788
Score = 36.6 bits (83), Expect = 0.19
Identities = 15/33 (45%), Positives = 26/33 (78%)
Frame = -1
Query: 347 RSVKFIRSNLLSILKAIDEQKLELSVKVQKYQV 249
R + R+NLLS+LK +++QKL++S+KVQ ++
Sbjct: 750 RKCEAYRTNLLSVLKEMEDQKLQVSIKVQNIKI 782
>ref|NP_195530.1| hypothetical protein; protein id: At4g38170.1 [Arabidopsis
thaliana] gi|7485858|pir||T05644 hypothetical protein
F20D10.290 - Arabidopsis thaliana
gi|4467123|emb|CAB37557.1| hypothetical protein
[Arabidopsis thaliana] gi|7270801|emb|CAB80482.1|
hypothetical protein [Arabidopsis thaliana]
Length = 531
Score = 35.8 bits (81), Expect = 0.32
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = -1
Query: 362 LTEQGRSVKFIRSNLLSILKAIDEQKLELSVKVQ 261
L G+ + R+NLLSIL+ ++EQK +LS+KVQ
Sbjct: 490 LERTGQRCEVYRANLLSILRDMEEQKFQLSLKVQ 523
>ref|NP_078438.1| glutamyl-tRNA synthetase [Ureaplasma urealyticum]
gi|11271638|pir||C82871 glutamyl-tRNA synthetase UU599
[imported] - Ureaplasma urealyticum
gi|6899610|gb|AAF31013.1|AE002158_11 glutamyl-tRNA
synthetase [Ureaplasma urealyticum]
Length = 482
Score = 31.2 bits (69), Expect = 7.9
Identities = 12/41 (29%), Positives = 23/41 (55%)
Frame = -3
Query: 462 ISLHIISTKHSYLCFVLLLQDDHDRTIGKLTHQLDRARKKC 340
++L ++ K +Y CF Q D DR + + +HQ + ++ C
Sbjct: 93 LALDLVDQKKAYFCFCSKEQLDADRELAEKSHQTPKYKRHC 133
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,267,116
Number of Sequences: 1393205
Number of extensions: 8309109
Number of successful extensions: 18902
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18899
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
