Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017522A_C01 KMC017522A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF91445.1|AF281652_1 putative DNA binding protein [Atriplex ... 148 5e-35
pir||T02069 probable DNA-binding protein GBP16 - rice gi|2511541... 129 2e-29
gb|AAK25936.1|AF360226_1 putative nuclear DNA-binding protein G2... 125 3e-28
ref|NP_190748.1| putative nuclear DNA-binding protein G2p; prote... 125 3e-28
sp|Q9UQ80|P2G4_HUMAN Proliferation-associated protein 2G4 (Cell ... 69 3e-11
>gb|AAF91445.1|AF281652_1 putative DNA binding protein [Atriplex hortensis]
Length = 397
Score = 148 bits (373), Expect = 5e-35
Identities = 73/95 (76%), Positives = 83/95 (86%), Gaps = 9/95 (9%)
Frame = -3
Query: 548 QPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHPLQELQPTKTVEDPEIKAWLALGTKT 369
QPYPVL+EKPGDYVAHIKFTVLLMPNGSDR+TS+P+QELQPTK+++DPEIKAWLALGTKT
Sbjct: 300 QPYPVLYEKPGDYVAHIKFTVLLMPNGSDRVTSYPVQELQPTKSIDDPEIKAWLALGTKT 359
Query: 368 KKKGGGKKKKGKKW--------AEAEPVE-STNGA 291
KKKGGGKKKK KK A+AEP++ S NGA
Sbjct: 360 KKKGGGKKKKAKKGEKSGAEESADAEPMDTSANGA 394
>pir||T02069 probable DNA-binding protein GBP16 - rice gi|2511541|gb|AAB80919.1|
DNA-binding protein GBP16 [Oryza sativa]
Length = 393
Score = 129 bits (324), Expect = 2e-29
Identities = 64/93 (68%), Positives = 73/93 (77%), Gaps = 1/93 (1%)
Frame = -3
Query: 548 QPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHPLQELQPTKTVED-PEIKAWLALGTK 372
QPYPVLHEKPGD VAHIKFTVLL+P+GS R+TSH LQ LQPTK++ED EIKAWLALGTK
Sbjct: 301 QPYPVLHEKPGDLVAHIKFTVLLLPSGSQRVTSHSLQVLQPTKSIEDHAEIKAWLALGTK 360
Query: 371 TKKKGGGKKKKGKKWAEAEPVESTNGATPQEQD 273
TKKK G +KKKGKK AE V G+ ++
Sbjct: 361 TKKKSGAQKKKGKKGDAAEAVPMEEGSNDANKE 393
>gb|AAK25936.1|AF360226_1 putative nuclear DNA-binding protein G2p [Arabidopsis thaliana]
gi|14532886|gb|AAK64125.1| putative nuclear DNA-binding
protein G2p [Arabidopsis thaliana]
Length = 392
Score = 125 bits (314), Expect = 3e-28
Identities = 66/93 (70%), Positives = 75/93 (79%), Gaps = 7/93 (7%)
Frame = -3
Query: 548 QPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHPLQELQPTKTVEDPEIKAWLALGTKT 369
QPYPVL+EKPGD+VA IKFTVLLMPNGSDRITSH LQEL P KT+EDPEIK WLALG K
Sbjct: 300 QPYPVLYEKPGDFVAQIKFTVLLMPNGSDRITSHTLQEL-PKKTIEDPEIKGWLALGIK- 357
Query: 368 KKKGGGKKK-------KGKKWAEAEPVESTNGA 291
KKKGGGKKK KG+ EAEP+++++ A
Sbjct: 358 KKKGGGKKKKAQKAGEKGEASTEAEPMDASSNA 390
>ref|NP_190748.1| putative nuclear DNA-binding protein G2p; protein id: At3g51800.1,
supported by cDNA: gi_13430627, supported by cDNA:
gi_14532885, supported by cDNA: gi_1657616, supported by
cDNA: gi_21307810, supported by cDNA: gi_21311298
[Arabidopsis thaliana] gi|11279169|pir||T51151 probable
nuclear DNA-binding protein G2p [imported] - Arabidopsis
thaliana gi|1657617|gb|AAB18127.1| G2p [Arabidopsis
thaliana] gi|3068707|gb|AAC14407.1| putative nuclear
DNA-binding protein G2p [Arabidopsis thaliana]
gi|21307811|gb|AAL25197.1| nuclear DNA-binding protein
[Arabidopsis thaliana] gi|21307813|gb|AAL25198.1|
nuclear DNA-binding protein [Arabidopsis thaliana]
gi|21311299|gb|AAM46648.1|AF422841_1 cell cycle-related
nuclear binding protein [Arabidopsis thaliana]
gi|23297076|gb|AAN13085.1| putative nuclear DNA-binding
protein G2p [Arabidopsis thaliana]
Length = 392
Score = 125 bits (314), Expect = 3e-28
Identities = 66/93 (70%), Positives = 75/93 (79%), Gaps = 7/93 (7%)
Frame = -3
Query: 548 QPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHPLQELQPTKTVEDPEIKAWLALGTKT 369
QPYPVL+EKPGD+VA IKFTVLLMPNGSDRITSH LQEL P KT+EDPEIK WLALG K
Sbjct: 300 QPYPVLYEKPGDFVAQIKFTVLLMPNGSDRITSHTLQEL-PKKTIEDPEIKGWLALGIK- 357
Query: 368 KKKGGGKKK-------KGKKWAEAEPVESTNGA 291
KKKGGGKKK KG+ EAEP+++++ A
Sbjct: 358 KKKGGGKKKKAQKAGEKGEASTEAEPMDASSNA 390
>sp|Q9UQ80|P2G4_HUMAN Proliferation-associated protein 2G4 (Cell cycle protein p38-2G4
homolog) (hG4-1) gi|4160449|gb|AAD05561.1| cell cycle
protein [Homo sapiens]
gi|12804995|gb|AAH01951.1|AAH01951
proliferation-associated 2G4, 38kD [Homo sapiens]
gi|14043147|gb|AAH07561.1|AAH07561 Unknown (protein for
MGC:15488) [Homo sapiens]
Length = 394
Score = 69.3 bits (168), Expect = 3e-11
Identities = 45/96 (46%), Positives = 59/96 (60%), Gaps = 4/96 (4%)
Frame = -3
Query: 548 QPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHPLQE--LQPTKTVEDPEIKAWL--AL 381
QP+ VL+EK G++VA KFTVLLMPNG RITS P + + V+D E+KA L +
Sbjct: 303 QPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALLQSSA 362
Query: 380 GTKTKKKGGGKKKKGKKWAEAEPVESTNGATPQEQD 273
KT+KK KKKK K AE +T+G T +E +
Sbjct: 363 SRKTQKK---KKKKASKTAE----NATSGETLEENE 391
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,392,610
Number of Sequences: 1393205
Number of extensions: 10619561
Number of successful extensions: 28977
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 27095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28699
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
