Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017520A_C01 KMC017520A_c01
(874 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190568.1| putative protein; protein id: At3g49990.1 [Arab... 87 3e-16
gb|AAO62333.1| unknown protein [Oryza sativa (japonica cultivar-... 80 5e-14
dbj|BAB55388.1| unnamed protein product [Homo sapiens] 42 0.012
ref|NP_116249.2| hypothetical protein FLJ14909 [Homo sapiens] gi... 42 0.012
ref|NP_491102.2| RIO1/ZK632.3/MJ0444 family family member [Caeno... 40 0.046
>ref|NP_190568.1| putative protein; protein id: At3g49990.1 [Arabidopsis thaliana]
gi|11357757|pir||T45852 hypothetical protein F3A4.70 -
Arabidopsis thaliana gi|6522920|emb|CAB62107.1| putative
protein [Arabidopsis thaliana]
gi|26449737|dbj|BAC41992.1| unknown protein [Arabidopsis
thaliana] gi|29028882|gb|AAO64820.1| At3g49990
[Arabidopsis thaliana]
Length = 502
Score = 87.4 bits (215), Expect = 3e-16
Identities = 49/82 (59%), Positives = 55/82 (66%)
Frame = -2
Query: 873 VDFLPGGRKPSTEKVKGLSNANTEQYTRKQHGLESKEEKKERKAAVKEERREARRVKKEM 694
V+FLPG R T+ + A E RK HG ESKEEKKERK AVK E+REAR +KK+
Sbjct: 419 VEFLPGRRAEQTDVKAEIPKA--EPIKRKTHGQESKEEKKERKNAVKAEKREARIIKKQT 476
Query: 693 KELYKGEAHRAQRAAAVSGPSS 628
K LY GE RAQRA A SGPSS
Sbjct: 477 KMLYCGETQRAQRAVATSGPSS 498
>gb|AAO62333.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 500
Score = 79.7 bits (195), Expect = 5e-14
Identities = 47/88 (53%), Positives = 59/88 (66%), Gaps = 2/88 (2%)
Frame = -2
Query: 873 VDFLPGGRKPSTEKVKGLSNANTEQYTRKQHGL--ESKEEKKERKAAVKEERREARRVKK 700
V++LP RK + EK K T + G E+KEEKK RKAAVKEE+REAR+ KK
Sbjct: 414 VEYLPQ-RKRNGEKEKKAKPTETPSAESFKKGAQKETKEEKKARKAAVKEEKREARKAKK 472
Query: 699 EMKELYKGEAHRAQRAAAVSGPSSIHLM 616
E+K LYK E +AQ+ AAV+GP+SI LM
Sbjct: 473 ELKGLYKFETQKAQKVAAVTGPASIRLM 500
>dbj|BAB55388.1| unnamed protein product [Homo sapiens]
Length = 299
Score = 42.0 bits (97), Expect = 0.012
Identities = 23/63 (36%), Positives = 40/63 (62%), Gaps = 1/63 (1%)
Frame = -2
Query: 840 TEKVKGLSNANTEQY-TRKQHGLESKEEKKERKAAVKEERREARRVKKEMKELYKGEAHR 664
TE+++ ++ ++ + T+ + ESKE+K+ RK A+KEER+E R KK K +K E R
Sbjct: 223 TERIQMINGSDLPKVSTQPRSKNESKEDKRARKQAIKEERKERRVEKKANKLAFKLEKRR 282
Query: 663 AQR 655
++
Sbjct: 283 QEK 285
>ref|NP_116249.2| hypothetical protein FLJ14909 [Homo sapiens]
gi|14602664|gb|AAH09855.1|AAH09855 Similar to nucleolin
[Homo sapiens]
Length = 475
Score = 42.0 bits (97), Expect = 0.012
Identities = 23/63 (36%), Positives = 40/63 (62%), Gaps = 1/63 (1%)
Frame = -2
Query: 840 TEKVKGLSNANTEQY-TRKQHGLESKEEKKERKAAVKEERREARRVKKEMKELYKGEAHR 664
TE+++ ++ ++ + T+ + ESKE+K+ RK A+KEER+E R KK K +K E R
Sbjct: 399 TERIQMINGSDLPKVSTQPRSKNESKEDKRARKQAIKEERKERRVEKKANKLAFKLEKRR 458
Query: 663 AQR 655
++
Sbjct: 459 QEK 461
>ref|NP_491102.2| RIO1/ZK632.3/MJ0444 family family member [Caenorhabditis elegans]
gi|21913062|gb|AAC17564.3| Hypothetical protein M01B12.5
[Caenorhabditis elegans]
Length = 524
Score = 40.0 bits (92), Expect = 0.046
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = -2
Query: 849 KPSTEKVKGLSNANTEQYTRKQHGLESKEEKKERKAAVKEERREARRVKKEMKELYKGEA 670
+P+ E+++ +TR + E+ EE+KERKAAVKEE+RE R K+++ + K A
Sbjct: 446 EPTEEEIQE-KERKIAMHTRNRE--ETAEERKERKAAVKEEKREQR--KEKIPKHLKKRA 500
Query: 669 HR 664
HR
Sbjct: 501 HR 502
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 720,817,646
Number of Sequences: 1393205
Number of extensions: 15187175
Number of successful extensions: 60297
Number of sequences better than 10.0: 161
Number of HSP's better than 10.0 without gapping: 52866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58563
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 46824663816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
