Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017504A_C01 KMC017504A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190684.1| putative protein; protein id: At3g51150.1 [Arab... 103 1e-23
ref|NP_201432.1| kinesin heavy chain DNA binding protein-like; p... 96 1e-20
gb|AAK50070.1|AF372930_1 AT5g66310/K1L20_9 [Arabidopsis thaliana] 96 1e-20
ref|NP_195606.1| kinesin like protein; protein id: At4g38950.1 [... 77 5e-14
ref|NP_179726.1| putative kinesin heavy chain; protein id: At2g2... 74 1e-13
>ref|NP_190684.1| putative protein; protein id: At3g51150.1 [Arabidopsis thaliana]
gi|11357626|pir||T45746 hypothetical protein F24M12.190
- Arabidopsis thaliana gi|6562267|emb|CAB62637.1|
putative protein [Arabidopsis thaliana]
Length = 968
Score = 103 bits (258), Expect(2) = 1e-23
Identities = 47/70 (67%), Positives = 58/70 (82%)
Frame = +1
Query: 334 GEEAIQDPSGHEERIHVSVRLRPLNDKELARNDVSEWECINDNTILYRSDFSASERSLYP 513
GE+ +Q SG EE+I VSVRLRPLN +E ARNDV++WECIND T++YRS S SERS+YP
Sbjct: 4 GEDQMQGSSGREEKIFVSVRLRPLNVRERARNDVADWECINDETVIYRSHLSISERSMYP 63
Query: 514 TAYSFDKSFG 543
TAY+FD+ FG
Sbjct: 64 TAYTFDRVFG 73
Score = 27.7 bits (60), Expect(2) = 1e-23
Identities = 10/17 (58%), Positives = 14/17 (81%)
Frame = +2
Query: 533 RVLGSDCSTRQVYEEAA 583
RV G +CSTR+VY++ A
Sbjct: 70 RVFGPECSTREVYDQGA 86
>ref|NP_201432.1| kinesin heavy chain DNA binding protein-like; protein id:
At5g66310.1 [Arabidopsis thaliana]
gi|10177425|dbj|BAB10710.1| kinesin heavy chain DNA
binding protein-like [Arabidopsis thaliana]
Length = 1037
Score = 95.5 bits (236), Expect(2) = 1e-20
Identities = 42/68 (61%), Positives = 56/68 (81%)
Frame = +1
Query: 337 EEAIQDPSGHEERIHVSVRLRPLNDKELARNDVSEWECINDNTILYRSDFSASERSLYPT 516
++ + PSG +E+I+VSVR+RPLNDKE RNDV +WECIN+ TI+YRS S SERS+YP+
Sbjct: 6 DDQMLGPSGTQEKIYVSVRMRPLNDKEKFRNDVPDWECINNTTIIYRSHLSISERSMYPS 65
Query: 517 AYSFDKSF 540
AY+FD+ F
Sbjct: 66 AYTFDRVF 73
Score = 25.8 bits (55), Expect(2) = 1e-20
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 533 RVLGSDCSTRQVYEEAA 583
RV +C TRQVYE+ A
Sbjct: 71 RVFSPECCTRQVYEQGA 87
>gb|AAK50070.1|AF372930_1 AT5g66310/K1L20_9 [Arabidopsis thaliana]
Length = 425
Score = 95.5 bits (236), Expect(2) = 1e-20
Identities = 42/68 (61%), Positives = 56/68 (81%)
Frame = +1
Query: 337 EEAIQDPSGHEERIHVSVRLRPLNDKELARNDVSEWECINDNTILYRSDFSASERSLYPT 516
++ + PSG +E+I+VSVR+RPLNDKE RNDV +WECIN+ TI+YRS S SERS+YP+
Sbjct: 6 DDQMLGPSGTQEKIYVSVRMRPLNDKEKFRNDVPDWECINNTTIIYRSHLSISERSMYPS 65
Query: 517 AYSFDKSF 540
AY+FD+ F
Sbjct: 66 AYTFDRVF 73
Score = 25.8 bits (55), Expect(2) = 1e-20
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 533 RVLGSDCSTRQVYEEAA 583
RV +C TRQVYE+ A
Sbjct: 71 RVFSPECCTRQVYEQGA 87
>ref|NP_195606.1| kinesin like protein; protein id: At4g38950.1 [Arabidopsis
thaliana] gi|7485797|pir||T06055 hypothetical protein
F19H22.50 - Arabidopsis thaliana
gi|4539314|emb|CAB38815.1| kinesin like protein
[Arabidopsis thaliana] gi|7270878|emb|CAB80558.1|
kinesin like protein [Arabidopsis thaliana]
Length = 834
Score = 76.6 bits (187), Expect(2) = 5e-14
Identities = 38/67 (56%), Positives = 48/67 (70%)
Frame = +1
Query: 340 EAIQDPSGHEERIHVSVRLRPLNDKELARNDVSEWECINDNTILYRSDFSASERSLYPTA 519
E Q P EE+I V VRLRPLN KE+A N+ ++WECIND TILYR+ + E S +P+A
Sbjct: 2 EKTQMPVAREEKILVLVRLRPLNQKEIAANEAADWECINDTTILYRN--TLREGSNFPSA 59
Query: 520 YSFDKSF 540
YSFDK +
Sbjct: 60 YSFDKVY 66
Score = 22.3 bits (46), Expect(2) = 5e-14
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 533 RVLGSDCSTRQVYEE 577
+V +C TRQVYE+
Sbjct: 64 KVYRGECPTRQVYED 78
>ref|NP_179726.1| putative kinesin heavy chain; protein id: At2g21300.1 [Arabidopsis
thaliana] gi|25412026|pir||F84599 probable kinesin heavy
chain [imported] - Arabidopsis thaliana
gi|4567265|gb|AAD23678.1| putative kinesin heavy chain
[Arabidopsis thaliana]
Length = 581
Score = 74.3 bits (181), Expect(2) = 1e-13
Identities = 38/79 (48%), Positives = 53/79 (66%), Gaps = 5/79 (6%)
Frame = +1
Query: 319 MGSMGGEEA-----IQDPSGHEERIHVSVRLRPLNDKELARNDVSEWECINDNTILYRSD 483
MG++ GEE Q EE+I V VRLRPLN+KE+ N+ ++WECIND T+LYR+
Sbjct: 1 MGAIAGEELKKMEKTQVHVAREEKILVLVRLRPLNEKEILANEAADWECINDTTVLYRN- 59
Query: 484 FSASERSLYPTAYSFDKSF 540
+ E S +P+AYSFD+ +
Sbjct: 60 -TLREGSTFPSAYSFDRVY 77
Score = 23.5 bits (49), Expect(2) = 1e-13
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 533 RVLGSDCSTRQVYEE 577
RV +C TRQVYE+
Sbjct: 75 RVYRGECPTRQVYED 89
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,246,831
Number of Sequences: 1393205
Number of extensions: 11455159
Number of successful extensions: 26245
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 25338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26232
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
