Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017491A_C01 KMC017491A_c01
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567212.1| putative CAAX prenyl protease; protein id: At4g... 176 3e-43
gb|AAL07084.1| putative CAAX prenyl protease [Arabidopsis thaliana] 176 3e-43
gb|AAK39514.1|AF353722_1 CaaX processing zinc-metallo endoprotea... 174 1e-42
pir||C85017 probable CAAX prenyl proteinase [imported] - Arabido... 160 1e-38
pir||T01712 hypothetical protein A_IG002N01.21 - Arabidopsis tha... 135 4e-31
>ref|NP_567212.1| putative CAAX prenyl protease; protein id: At4g01320.1, supported
by cDNA: gi_13785908, supported by cDNA: gi_15810392,
supported by cDNA: gi_19699056 [Arabidopsis thaliana]
gi|19699057|gb|AAL90896.1| AT4g01320/F2N1_21
[Arabidopsis thaliana]
Length = 424
Score = 176 bits (445), Expect = 3e-43
Identities = 87/103 (84%), Positives = 92/103 (88%)
Frame = -2
Query: 629 FQSFGFDTQPVLIGLILFQHTVIPLQQLVSFGLNLVSRSFEFQADAFAKNLGYAAELRLG 450
F+SFGFDTQPVLIGLI+FQHTVIPLQ LVSFGLNLVSR+FEFQADAFA LGYA +LR
Sbjct: 322 FRSFGFDTQPVLIGLIIFQHTVIPLQHLVSFGLNLVSRAFEFQADAFAVKLGYAKDLRPA 381
Query: 449 LVRLQEENLSAMNTDPWYSAYHYSHPPLVERLEAIDKSDKKAD 321
LV+LQEENLSAMNTDP YSAYHYSHPPLVERL AID DKK D
Sbjct: 382 LVKLQEENLSAMNTDPLYSAYHYSHPPLVERLRAIDGEDKKTD 424
>gb|AAL07084.1| putative CAAX prenyl protease [Arabidopsis thaliana]
Length = 424
Score = 176 bits (445), Expect = 3e-43
Identities = 87/103 (84%), Positives = 92/103 (88%)
Frame = -2
Query: 629 FQSFGFDTQPVLIGLILFQHTVIPLQQLVSFGLNLVSRSFEFQADAFAKNLGYAAELRLG 450
F+SFGFDTQPVLIGLI+FQHTVIPLQ LVSFGLNLVSR+FEFQADAFA LGYA +LR
Sbjct: 322 FRSFGFDTQPVLIGLIIFQHTVIPLQHLVSFGLNLVSRAFEFQADAFAVKLGYAKDLRPA 381
Query: 449 LVRLQEENLSAMNTDPWYSAYHYSHPPLVERLEAIDKSDKKAD 321
LV+LQEENLSAMNTDP YSAYHYSHPPLVERL AID DKK D
Sbjct: 382 LVKLQEENLSAMNTDPLYSAYHYSHPPLVERLRAIDGEDKKTD 424
>gb|AAK39514.1|AF353722_1 CaaX processing zinc-metallo endoprotease [Arabidopsis thaliana]
Length = 424
Score = 174 bits (440), Expect = 1e-42
Identities = 86/103 (83%), Positives = 92/103 (88%)
Frame = -2
Query: 629 FQSFGFDTQPVLIGLILFQHTVIPLQQLVSFGLNLVSRSFEFQADAFAKNLGYAAELRLG 450
F+SFGFDTQPVLIGLI+FQHTVIPLQ LVSFGLNLVSR+FEFQADAFA LGYA +LR
Sbjct: 322 FRSFGFDTQPVLIGLIIFQHTVIPLQHLVSFGLNLVSRAFEFQADAFAVKLGYAKDLRPA 381
Query: 449 LVRLQEENLSAMNTDPWYSAYHYSHPPLVERLEAIDKSDKKAD 321
LV+LQEENLSAMNTDP +SAYHYSHPPLVERL AID DKK D
Sbjct: 382 LVKLQEENLSAMNTDPLHSAYHYSHPPLVERLRAIDGEDKKTD 424
>pir||C85017 probable CAAX prenyl proteinase [imported] - Arabidopsis thaliana
gi|7267629|emb|CAB80941.1| putative CAAX prenyl protease
[Arabidopsis thaliana]
Length = 459
Score = 160 bits (406), Expect = 1e-38
Identities = 87/131 (66%), Positives = 92/131 (69%), Gaps = 28/131 (21%)
Frame = -2
Query: 629 FQSFGFDTQPVLIGLILFQHTVIPLQQLVSFGLNLVSRSFEFQADAFAKNLGYAAELRLG 450
F+SFGFDTQPVLIGLI+FQHTVIPLQ LVSFGLNLVSR+FEFQADAFA LGYA +LR
Sbjct: 329 FRSFGFDTQPVLIGLIIFQHTVIPLQHLVSFGLNLVSRAFEFQADAFAVKLGYAKDLRPA 388
Query: 449 LVR----------------------------LQEENLSAMNTDPWYSAYHYSHPPLVERL 354
LV+ LQEENLSAMNTDP YSAYHYSHPPLVERL
Sbjct: 389 LVKLQVREDNNRTQTVTSICVTHLNGFFVGILQEENLSAMNTDPLYSAYHYSHPPLVERL 448
Query: 353 EAIDKSDKKAD 321
AID DKK D
Sbjct: 449 RAIDGEDKKTD 459
>pir||T01712 hypothetical protein A_IG002N01.21 - Arabidopsis thaliana
gi|2191141|gb|AAB61028.1| A_IG002N01.21 gene product
[Arabidopsis thaliana]
Length = 316
Score = 135 bits (340), Expect = 4e-31
Identities = 72/98 (73%), Positives = 75/98 (76%), Gaps = 10/98 (10%)
Frame = -2
Query: 584 ILFQHTVIPLQQLVSFGLNLVSRSFEFQADAFAKNLGYAAELRLGLVRLQ---------- 435
I QHTVIPLQ LVSFGLNLVSR+FEFQADAFA LGYA +LR LV+LQ
Sbjct: 219 IAVQHTVIPLQHLVSFGLNLVSRAFEFQADAFAVKLGYAKDLRPALVKLQVREDNNRTQT 278
Query: 434 EENLSAMNTDPWYSAYHYSHPPLVERLEAIDKSDKKAD 321
EENLSAMNTDP YSAYHYSHPPLVERL AID DKK D
Sbjct: 279 EENLSAMNTDPLYSAYHYSHPPLVERLRAIDGEDKKTD 316
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,716,294
Number of Sequences: 1393205
Number of extensions: 10463012
Number of successful extensions: 33175
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 32529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33135
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
