Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017465A_C01 KMC017465A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB85914.1| auxin response factor 6a [Oryza sativa] 46 4e-04
ref|NP_174323.1| auxin response transcription factor(ARF6); prot... 44 0.001
dbj|BAB85915.1| auxin response factor 6b [Oryza sativa] 40 0.021
ref|NP_198518.1| auxin response transcription factor(ARF8); prot... 39 0.047
dbj|BAB08972.1| auxin responsive transcription factor [Arabidops... 39 0.047
>dbj|BAB85914.1| auxin response factor 6a [Oryza sativa]
Length = 396
Score = 45.8 bits (107), Expect = 4e-04
Identities = 23/42 (54%), Positives = 30/42 (70%), Gaps = 1/42 (2%)
Frame = -1
Query: 576 MYPSPFSLRLRRPWXSGX-SLYGLKDGDMSIGGSRFLWLQGS 454
MYPSPF LRL+RPW +G SLYG K+ D++ S +WL+ S
Sbjct: 350 MYPSPFPLRLKRPWPTGLPSLYGGKEDDLA---SSLMWLRDS 388
>ref|NP_174323.1| auxin response transcription factor(ARF6); protein id: At1g30330.1,
supported by cDNA: gi_4102599 [Arabidopsis thaliana]
gi|25403108|pir||F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana
gi|4102600|gb|AAD01513.1| ARF6 [Arabidopsis thaliana]
gi|12322119|gb|AAG51093.1|AC025295_1 auxin response
factor 6 (ARF6) [Arabidopsis thaliana]
Length = 933
Score = 44.3 bits (103), Expect = 0.001
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = -1
Query: 576 MYPSPFSLRLRRPWXSGX-SLYGLKDGDMSIG-GSRFLWLQG 457
MYPSPF LRL+RPW G S +GLK+ DM + S +W +G
Sbjct: 364 MYPSPFPLRLKRPWPPGLPSFHGLKEDDMGMSMSSPLMWDRG 405
>dbj|BAB85915.1| auxin response factor 6b [Oryza sativa]
Length = 880
Score = 40.0 bits (92), Expect = 0.021
Identities = 18/42 (42%), Positives = 28/42 (65%), Gaps = 3/42 (7%)
Frame = -1
Query: 576 MYPSPFSLRLRRPWXSGXSLYGLKDGDMSIGGSRF---LWLQ 460
MYPS F LRL+RPW SG ++G+ +G + +R+ +WL+
Sbjct: 350 MYPSAFPLRLKRPWASGLPMHGMFNGGGNDDFARYSSLMWLR 391
>ref|NP_198518.1| auxin response transcription factor(ARF8); protein id: At5g37020.1,
supported by cDNA: gi_4104930 [Arabidopsis thaliana]
gi|4104931|gb|AAD02219.1| auxin response factor 8
[Arabidopsis thaliana]
Length = 811
Score = 38.9 bits (89), Expect = 0.047
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = -1
Query: 576 MYPSPFSLRLRRPWXSGXSLYGLKDGDMSIGGSRFLWLQG 457
MYPS F LRL+RPW +G S GD+ GS WL+G
Sbjct: 363 MYPSLFPLRLKRPWHAGTSSLPDGRGDL---GSGLTWLRG 399
>dbj|BAB08972.1| auxin responsive transcription factor [Arabidopsis thaliana]
Length = 821
Score = 38.9 bits (89), Expect = 0.047
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = -1
Query: 576 MYPSPFSLRLRRPWXSGXSLYGLKDGDMSIGGSRFLWLQG 457
MYPS F LRL+RPW +G S GD+ GS WL+G
Sbjct: 363 MYPSLFPLRLKRPWHAGTSSLPDGRGDL---GSGLTWLRG 399
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,938,640
Number of Sequences: 1393205
Number of extensions: 9698931
Number of successful extensions: 21065
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21060
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
