Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017454A_C01 KMC017454A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197209.2| putative protein; protein id: At5g17070.1, supp... 39 0.029
pir||T51562 hypothetical protein F2K13_220 - Arabidopsis thalian... 39 0.029
ref|NP_198260.1| putative protein; protein id: At5g29080.1 [Arab... 39 0.029
gb|EAA06779.1| ebiP1657 [Anopheles gambiae str. PEST] 39 0.050
gb|AAM29589.1| RH35718p [Drosophila melanogaster] 37 0.11
>ref|NP_197209.2| putative protein; protein id: At5g17070.1, supported by cDNA:
gi_18252986 [Arabidopsis thaliana]
gi|18252987|gb|AAL62420.1| putative protein [Arabidopsis
thaliana] gi|21389675|gb|AAM48036.1| putative protein
[Arabidopsis thaliana]
Length = 277
Score = 39.3 bits (90), Expect = 0.029
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = -1
Query: 494 EHPCEKQEHPSDSAPNGIEPSVATDKD--EVMAADKDEVMAEAE-ADTRDDMTVDTEAFE 324
E + E P+ + I + + D + E M DKDE+M E E AD D MTVD E +
Sbjct: 176 EPQSQTTEDPNTATSETITSAASCDPNVIESMGGDKDEIMTEVEEADVDDAMTVDMETID 235
Query: 323 DAKPPETISEPHSETNSNSA 264
+ T + + N+A
Sbjct: 236 EPSETMTTTSESETLSENTA 255
>pir||T51562 hypothetical protein F2K13_220 - Arabidopsis thaliana
gi|9755708|emb|CAC01720.1| putative protein [Arabidopsis
thaliana]
Length = 254
Score = 39.3 bits (90), Expect = 0.029
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Frame = -1
Query: 494 EHPCEKQEHPSDSAPNGIEPSVATDKD--EVMAADKDEVMAEA-EADTRDDMTVDTEAFE 324
E + E P+ + I + + D + E M DKDE+M E EAD D MTVD E +
Sbjct: 176 EPQSQTTEDPNTATSETITSAASCDPNVIESMGGDKDEIMTEVEEADVDDAMTVDMETID 235
Query: 323 DAKPPETI-SEPHSETNSNSA 264
+ P ET+ + SET S ++
Sbjct: 236 E--PSETMTTTSESETLSENS 254
>ref|NP_198260.1| putative protein; protein id: At5g29080.1 [Arabidopsis thaliana]
Length = 126
Score = 39.3 bits (90), Expect = 0.029
Identities = 19/69 (27%), Positives = 36/69 (51%)
Frame = -1
Query: 452 PNGIEPSVATDKDEVMAADKDEVMAEAEADTRDDMTVDTEAFEDAKPPETISEPHSETNS 273
P P +TD D + A D++MAE T+ DM+++++ E ++ + +P S +
Sbjct: 21 PENFAPPSSTDDDSLSVAMNDQIMAEDSKSTKSDMSIESDPSECSENDDDHHDPLSSEEA 80
Query: 272 NSA*VLWLL 246
N V W++
Sbjct: 81 NH--VEWMI 87
>gb|EAA06779.1| ebiP1657 [Anopheles gambiae str. PEST]
Length = 284
Score = 38.5 bits (88), Expect = 0.050
Identities = 27/90 (30%), Positives = 39/90 (43%)
Frame = +1
Query: 247 SNHKTHALLELVSEWGSEMVSGGLASSKASVSTVISSRVSASASAITSSLSAAITSSLSV 426
SN T + S S S +S S T SS ++S S+ TSS S+ +S S
Sbjct: 76 SNSCTSSCSSGTSSRSSSTTSSSSGTSSCSSGTTSSSSCASSCSSSTSSCSSGTSSCRS- 134
Query: 427 ATEGSMPFGALSDGCSCFSHGCSCFSHGCS 516
G+ + + CSC + CS + CS
Sbjct: 135 ---GTSSCSSCTTSCSCCTSSCSSCASSCS 161
Score = 35.8 bits (81), Expect = 0.32
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Frame = +1
Query: 295 SEMVSGGLASSKASVSTVISSRVSASASAITSSLSAAITSSLSVATEGSMPFGALSDG-- 468
S S +S S T S + S+S+ TSS S+ TSS S A+ S + S G
Sbjct: 71 SSTSSSNSCTSSCSSGTSSRSSSTTSSSSGTSSCSSGTTSSSSCASSCSSSTSSCSSGTS 130
Query: 469 --------CSCFSHGCSCFSHGCS 516
CS + CSC + CS
Sbjct: 131 SCRSGTSSCSSCTTSCSCCTSSCS 154
Score = 32.7 bits (73), Expect = 2.7
Identities = 25/69 (36%), Positives = 36/69 (51%), Gaps = 3/69 (4%)
Frame = +1
Query: 319 ASSKASVSTVISSRVSASASAITSSLSAAITSSLSVATEGSMPFGALSDG---CSCFSHG 489
ASS +S ++ SS ++S S+ SS S+ TSS S A+ S + S G CS +
Sbjct: 177 ASSSSSCASSCSS-CASSCSSCASSCSSGTTSSSSCASSCSSSTSSSSSGTTSCSSGTTS 235
Query: 490 CSCFSHGCS 516
SC + CS
Sbjct: 236 SSCCTSSCS 244
Score = 32.3 bits (72), Expect = 3.6
Identities = 23/68 (33%), Positives = 30/68 (43%)
Frame = +1
Query: 322 SSKASVSTVISSRVSASASAITSSLSAAITSSLSVATEGSMPFGALSDGCSCFSHGCSCF 501
SS S ++ SS S+ +S+ TSS S + S + S S SC S SC
Sbjct: 74 SSSNSCTSSCSSGTSSRSSSTTSSSSGTSSCSSGTTSSSSCASSCSSSTSSCSSGTSSCR 133
Query: 502 SHGCSCFS 525
S SC S
Sbjct: 134 SGTSSCSS 141
Score = 32.3 bits (72), Expect = 3.6
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +1
Query: 283 SEWGSEMVSGGLASSKASVSTVISSRVSASASAITSSLSAAITSSLSVATEGSMPFGALS 462
S S S +S S ST SS + S S+ T+S S+ TSS S +T S S
Sbjct: 199 SSCSSGTTSSSSCASSCSSSTSSSSSGTTSCSSGTTS-SSCCTSSCSSSTSSSCSGTTAS 257
Query: 463 DGC--SCFSHGCSCFSHGCSCFS 525
C SC S SC S S S
Sbjct: 258 SSCASSCSSCASSCSSSTSSSSS 280
Score = 32.0 bits (71), Expect = 4.7
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 319 ASSKASVSTVISSRVSASASAITSSLSAAITSSLSVATEGSMPFGALSDGCS-CFSHGCS 495
ASS +S +T SS + S S+ TSS S++ +S S T S + S G S C S S
Sbjct: 3 ASSSSSGATT-SSCCTTSCSSGTSSCSSSTSSGSSGTTSCSSCTSSCSSGTSSCSSATSS 61
Query: 496 CFSHGCSCFS 525
C S SC S
Sbjct: 62 CSSGTTSCTS 71
>gb|AAM29589.1| RH35718p [Drosophila melanogaster]
Length = 1000
Score = 37.4 bits (85), Expect = 0.11
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Frame = -1
Query: 524 EKQEHPCEK-----QEHPCEKQEHPSDSAPNGIEPSVATDKDEVMAADKDEVMAEAEADT 360
+KQ P K ++ P K+ H +D A NG+ P+ A +D V D D + EAE
Sbjct: 235 QKQSTPNGKASSGDEKEPFAKETH-TDDASNGLAPATALQEDLVKTHDDDALDFEAE--- 290
Query: 359 RDDMTVDTEAFEDAKPPETISEPHSETNSNSA 264
+ E E AK P + +ETN +
Sbjct: 291 ------EGECPEQAKEPSPMESTANETNQTKS 316
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,728,191
Number of Sequences: 1393205
Number of extensions: 10354410
Number of successful extensions: 44957
Number of sequences better than 10.0: 182
Number of HSP's better than 10.0 without gapping: 38459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43886
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
