Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017448A_C01 KMC017448A_c01
(719 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BAE0|FTSH_MEDSA Cell division protein ftsH homolog, chlorop... 233 2e-60
ref|NP_568604.1| FtsH protease, putative; protein id: At5g42270.... 205 6e-52
sp|O82150|FTSH_TOBAC Cell division protein ftsH homolog, chlorop... 196 2e-49
sp|Q39444|FTSH_CAPAN Cell division protein ftsH homolog, chlorop... 174 1e-42
ref|NP_564563.1| chloroplast FtsH protease; protein id: At1g5025... 168 8e-41
>sp|Q9BAE0|FTSH_MEDSA Cell division protein ftsH homolog, chloroplast precursor
gi|13183728|gb|AAK15322.1|AF332134_1 FtsH protease
[Medicago sativa]
Length = 706
Score = 233 bits (595), Expect = 2e-60
Identities = 134/193 (69%), Positives = 153/193 (78%), Gaps = 3/193 (1%)
Frame = +1
Query: 148 MAFSTSALLSTNFLGTKVLLSPPTPKTTKQSLPLPSCLNT--WSQKPKKNINFSEPLKLA 321
MAFSTS+LLSTNFLG + + PTPKTTK S+ LP T ++ + N N SEP+K
Sbjct: 1 MAFSTSSLLSTNFLGARNI---PTPKTTKPSISLPLFFKTKFFNSQNDNNNNNSEPIK-- 55
Query: 322 SSQAALAALIFSSASFTAPEAIAVAENTTPPPPVIEAPQPSQLNAANS-SPFAQNLSLTA 498
AA++ALI SS FT P A+A PPPPV+EA QP+QLN ANS SPF+QN+SLTA
Sbjct: 56 --SAAVSALILSSM-FT-PAALAADNLPPPPPPVLEA-QPNQLNPANSTSPFSQNISLTA 110
Query: 499 PKPQSQNSSDLPDGTQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRAGVIVPND 678
PKPQ+Q+S+DLPDG+QWRYSEFLNAVKKGKVERVRFSKDGS LQLTAVDGRRA VIVPND
Sbjct: 111 PKPQAQSSTDLPDGSQWRYSEFLNAVKKGKVERVRFSKDGSVLQLTAVDGRRANVIVPND 170
Query: 679 PDLIDILAMNGVD 717
PDLIDILAMNGVD
Sbjct: 171 PDLIDILAMNGVD 183
>ref|NP_568604.1| FtsH protease, putative; protein id: At5g42270.1 [Arabidopsis
thaliana] gi|17865467|sp|Q9FH02|FTH2_ARATH Cell division
protein ftsH homolog 2, chloroplast precursor
gi|10177012|dbj|BAB10200.1| cell division protein FtsH
[Arabidopsis thaliana] gi|22022513|gb|AAM83215.1|
AT5g42270/K5J14_7 [Arabidopsis thaliana]
Length = 704
Score = 205 bits (521), Expect = 6e-52
Identities = 118/188 (62%), Positives = 138/188 (72%), Gaps = 1/188 (0%)
Frame = +1
Query: 157 STSALLSTNFLGTKVLLSPPTPKTTKQSLPLPSCLNTWSQKPKKNINFSEPL-KLASSQA 333
S LLS+NFLG+++++S PTPKTT +SLP + + I+ SE L K SQA
Sbjct: 6 SNPLLLSSNFLGSQIIISAPTPKTTTKSLPFSVI-----SRKRYQISQSEKLMKSLPSQA 60
Query: 334 ALAALIFSSASFTAPEAIAVAENTTPPPPVIEAPQPSQLNAANSSPFAQNLSLTAPKPQS 513
ALAAL+FSS+S P+A+AV E PP P I A + + N S F QN+ +TAP PQ+
Sbjct: 61 ALAALLFSSSS---PQALAVNEPVQPPAPTITA----EAQSPNLSTFGQNVLMTAPNPQA 113
Query: 514 QNSSDLPDGTQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRAGVIVPNDPDLID 693
Q SSDLPDGTQWRYSEFLNAVKKGKVERV+FSKDGS LQLTAVD RRA VIVPNDPDLID
Sbjct: 114 Q-SSDLPDGTQWRYSEFLNAVKKGKVERVKFSKDGSVLQLTAVDNRRATVIVPNDPDLID 172
Query: 694 ILAMNGVD 717
ILAMNGVD
Sbjct: 173 ILAMNGVD 180
>sp|O82150|FTSH_TOBAC Cell division protein ftsH homolog, chloroplast precursor (DS9)
gi|5804782|dbj|BAA33755.2| chloroplast FtsH protease
[Nicotiana tabacum]
Length = 714
Score = 196 bits (499), Expect = 2e-49
Identities = 114/193 (59%), Positives = 138/193 (71%), Gaps = 8/193 (4%)
Frame = +1
Query: 163 SALLSTNFLGTKVLLSPPTPKTTK--------QSLPLPSCLNTWSQKPKKNINFSEPLKL 318
++LLS+NF+G+++ +SPPTPKTTK +SL S LN +KP S+ K
Sbjct: 3 NSLLSSNFMGSQIFVSPPTPKTTKYFHFHSKRKSLIPQSILN---KKPN-----SDNSKN 54
Query: 319 ASSQAALAALIFSSASFTAPEAIAVAENTTPPPPVIEAPQPSQLNAANSSPFAQNLSLTA 498
S+AALAAL+FSS + P A A+ +NTTP P Q N S+PF+QN+ L A
Sbjct: 55 IPSKAALAALLFSSIT---PHAYAL-DNTTPTVPTPRVIQAEAANPTTSNPFSQNIILNA 110
Query: 499 PKPQSQNSSDLPDGTQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRAGVIVPND 678
PKPQ+Q + +LP+ +QWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRA V VPND
Sbjct: 111 PKPQAQTNPELPEVSQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRATVTVPND 170
Query: 679 PDLIDILAMNGVD 717
PDLIDILAMNGVD
Sbjct: 171 PDLIDILAMNGVD 183
>sp|Q39444|FTSH_CAPAN Cell division protein ftsH homolog, chloroplast precursor
gi|2129924|pir||S58298 ATPase - pepper (fragment)
gi|929013|emb|CAA62084.1| ATPase [Capsicum annuum]
Length = 662
Score = 174 bits (440), Expect = 1e-42
Identities = 100/154 (64%), Positives = 114/154 (73%), Gaps = 2/154 (1%)
Frame = +1
Query: 262 NTWSQKPKKNINFSEPLKLASSQAALAALIFSSASFTAPEAIAV--AENTTPPPPVIEAP 435
+T ++KP S+ K A S+AALAAL+FSS + P AIA+ A PP V+E
Sbjct: 16 STLNKKPN-----SDNFKNAQSKAALAALLFSSIT---PHAIALDDAAPIASPPQVMEVE 67
Query: 436 QPSQLNAANSSPFAQNLSLTAPKPQSQNSSDLPDGTQWRYSEFLNAVKKGKVERVRFSKD 615
P+ N +N PF+QNL L APK Q+ SDLP+ TQWRYSEFLNAVKKGKVERVRFSKD
Sbjct: 68 APNP-NTSNPLPFSQNLVLNAPKTQASPVSDLPESTQWRYSEFLNAVKKGKVERVRFSKD 126
Query: 616 GSALQLTAVDGRRAGVIVPNDPDLIDILAMNGVD 717
GSALQLTAVDGRRA VIVPNDPDLIDILAMNGVD
Sbjct: 127 GSALQLTAVDGRRANVIVPNDPDLIDILAMNGVD 160
>ref|NP_564563.1| chloroplast FtsH protease; protein id: At1g50250.1, supported by
cDNA: gi_20268683 [Arabidopsis thaliana]
gi|17865766|sp|Q39102|FTH1_ARATH Cell division protein
ftsH homolog 1, chloroplast precursor
gi|25308074|pir||G96538 hypothetical protein F14I3.14
[imported] - Arabidopsis thaliana
gi|5734790|gb|AAD50055.1|AC007980_20 ATP-dependent
metalloprotease [Arabidopsis thaliana]
gi|20268684|gb|AAM14046.1| putative chloroplast FtsH
protease [Arabidopsis thaliana]
gi|21689847|gb|AAM67567.1| putative chloroplast FtsH
protease [Arabidopsis thaliana]
Length = 716
Score = 168 bits (425), Expect = 8e-41
Identities = 107/199 (53%), Positives = 132/199 (65%), Gaps = 12/199 (6%)
Frame = +1
Query: 157 STSALLSTN--FLGTKVLLSPPTPKTTKQSLPLPSCLNTWSQKPKKNINFS--------- 303
S S L S++ FLG+ +++S PTPKTT++ PS ++ + K I S
Sbjct: 3 SNSLLRSSSNFFLGSHIIISSPTPKTTRK----PSFPFSFVSRAKYQITRSSQDENSPNG 58
Query: 304 EPLKLASSQAALAALIFSSASFTAPEAIAVAENTTPPPPVIEAPQPSQLNAANSSP-FAQ 480
+P SSQ ALAA++ SS S ++P A+AV + P VIE+ + + SP F Q
Sbjct: 59 KPNSPFSSQVALAAILLSSIS-SSPLALAVVDEPASPSVVIES---QAVKPSTPSPLFIQ 114
Query: 481 NLSLTAPKPQSQNSSDLPDGTQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRRAG 660
N L AP P+S SDLP+G+QWRYSEFLNAVKKGKVERVRFSKDGS +QLTAVD RRA
Sbjct: 115 NEILKAPSPKS---SDLPEGSQWRYSEFLNAVKKGKVERVRFSKDGSVVQLTAVDNRRAS 171
Query: 661 VIVPNDPDLIDILAMNGVD 717
VIVPNDPDLIDILAMNGVD
Sbjct: 172 VIVPNDPDLIDILAMNGVD 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 664,920,196
Number of Sequences: 1393205
Number of extensions: 16212987
Number of successful extensions: 88743
Number of sequences better than 10.0: 539
Number of HSP's better than 10.0 without gapping: 71705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85791
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33499052993
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
