Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017394A_C01 KMC017394A_c01
(730 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC03911.1| unnamed protein product [Homo sapiens] 36 0.63
dbj|BAC04860.1| unnamed protein product [Homo sapiens] 36 0.63
gb|AAC51370.1| secretory mucin MUC6 [Homo sapiens] 35 1.4
sp|P11161|EGR2_HUMAN Early growth response protein 2 (EGR-2) (Kr... 34 2.4
ref|NP_000390.2| early growth response 2 protein; KROX-20, Droso... 34 2.4
>dbj|BAC03911.1| unnamed protein product [Homo sapiens]
Length = 325
Score = 35.8 bits (81), Expect = 0.63
Identities = 37/122 (30%), Positives = 55/122 (44%), Gaps = 16/122 (13%)
Frame = -2
Query: 717 IKPSIHSSHLLS*TFFLLFSQTHSPTSAFSN----PLSLSLEASIKPTLPHQPSLPFS-T 553
+ +HS+ L S + L TH T++ S P S + +I+ TLPH S PF+ +
Sbjct: 135 VSAPVHSTTLSSGSHSSL--STHPTTASVSASPLFPSSPAASTTIRATLPHTISSPFTLS 192
Query: 552 VLLSLSLKPILPLCSEIEASFSSLLRSKP---------PSYSSQ--TQIEEGATNLVPST 406
LL +S + P S AS + S P P++SSQ T T VP++
Sbjct: 193 ALLPISTVTVSPTPSSHLASSTIAFPSTPRTTASTHTAPAFSSQSTTSRSTSLTTRVPTS 252
Query: 405 SF 400
F
Sbjct: 253 GF 254
>dbj|BAC04860.1| unnamed protein product [Homo sapiens]
Length = 577
Score = 35.8 bits (81), Expect = 0.63
Identities = 37/122 (30%), Positives = 55/122 (44%), Gaps = 16/122 (13%)
Frame = -2
Query: 717 IKPSIHSSHLLS*TFFLLFSQTHSPTSAFSN----PLSLSLEASIKPTLPHQPSLPFS-T 553
+ +HS+ L S + L TH T++ S P S + +I+ TLPH S PF+ +
Sbjct: 304 VSAPVHSTTLSSGSHSSL--STHPTTASVSASPLFPSSPAASTTIRATLPHTISSPFTLS 361
Query: 552 VLLSLSLKPILPLCSEIEASFSSLLRSKP---------PSYSSQ--TQIEEGATNLVPST 406
LL +S + P S AS + S P P++SSQ T T VP++
Sbjct: 362 ALLPISTVTVSPTPSSHLASSTIAFPSTPRTTASTHTAPAFSSQSTTSRSTSLTTRVPTS 421
Query: 405 SF 400
F
Sbjct: 422 GF 423
>gb|AAC51370.1| secretory mucin MUC6 [Homo sapiens]
Length = 421
Score = 34.7 bits (78), Expect = 1.4
Identities = 38/123 (30%), Positives = 58/123 (46%), Gaps = 17/123 (13%)
Frame = -2
Query: 717 IKPSIHSSHLLS*TFFLLFSQTHSPTSAFSN----PLSLSLEASIKPTLPHQPSLPFS-T 553
+ +HS+ L S + L TH T + S P S + +I+ TLPH S PF+ +
Sbjct: 148 VSAPVHSTTLSSGSHSSL--STHPTTGSGSASPLFPSSPAASTTIRATLPHTISSPFTLS 205
Query: 552 VLLSLSLKPILPLCSEIEASFSSLLRSKP---------PSYSSQTQIEEGATNL---VPS 409
LL +S + P S AS + S P P++SSQ+ G+T+L VP+
Sbjct: 206 ALLPISTVTVSPTPSSHLASSTIAFPSTPRTTASTHTAPAFSSQS-TTSGSTSLTTRVPT 264
Query: 408 TSF 400
+ F
Sbjct: 265 SGF 267
>sp|P11161|EGR2_HUMAN Early growth response protein 2 (EGR-2) (Krox-20 protein) (AT591)
Length = 476
Score = 33.9 bits (76), Expect = 2.4
Identities = 28/104 (26%), Positives = 41/104 (38%), Gaps = 6/104 (5%)
Frame = -2
Query: 648 SPTSAFSNPLSLSLEASIKPTLPH-----QPSLPFSTVLLSLSLKPILPLCSEIEASFSS 484
SP + PL + + +P L H P P+S L P L + ++ SS
Sbjct: 140 SPNPLATGPLGVCTMSQTQPDLDHLYSPPPPPPPYSGCAGDLYQDPSAFLSAATTSTSSS 199
Query: 483 LLRSKPPSY-SSQTQIEEGATNLVPSTSFHFSRVVQRHIRGQIG 355
L PPSY S + + G ++P F QR + G G
Sbjct: 200 LAYPPPPSYPSPKPATDPGLFPMIPDYPGFFPSQCQRDLHGTAG 243
>ref|NP_000390.2| early growth response 2 protein; KROX-20, Drosophila, homolog
(early growth response-2); early growth response 2
(Krox-20 (Drosophila) homolog); Krox-20 homolog [Homo
sapiens] gi|4581055|gb|AAD24588.1|AF139463_1 early
growth response 2 protein [Homo sapiens]
Length = 476
Score = 33.9 bits (76), Expect = 2.4
Identities = 28/104 (26%), Positives = 41/104 (38%), Gaps = 6/104 (5%)
Frame = -2
Query: 648 SPTSAFSNPLSLSLEASIKPTLPH-----QPSLPFSTVLLSLSLKPILPLCSEIEASFSS 484
SP + PL + + +P L H P P+S L P L + ++ SS
Sbjct: 140 SPNPLATGPLGVCTMSQTQPDLDHLYSPPPPPPPYSGCAGDLYQDPSAFLSAATTSTSSS 199
Query: 483 LLRSKPPSY-SSQTQIEEGATNLVPSTSFHFSRVVQRHIRGQIG 355
L PPSY S + + G ++P F QR + G G
Sbjct: 200 LAYPPPPSYPSPKPATDPGLFPMIPDYPGFFPSQCQRDLHGTAG 243
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 648,436,452
Number of Sequences: 1393205
Number of extensions: 15018750
Number of successful extensions: 46454
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46235
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
