Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017386A_C01 KMC017386A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191772.1| putative protein; protein id: At3g62130.1, supp... 122 2e-27
ref|NP_198012.1| putative protein; protein id: At5g26595.1 [Arab... 98 6e-20
dbj|BAA96579.1| unnamed protein product [Oryza sativa (japonica ... 92 2e-18
dbj|BAA96581.1| unnamed protein product [Oryza sativa (japonica ... 80 9e-15
dbj|BAB84909.1| FLJ00154 protein [Homo sapiens] 35 0.60
>ref|NP_191772.1| putative protein; protein id: At3g62130.1, supported by cDNA:
27922., supported by cDNA: gi_17064881 [Arabidopsis
thaliana] gi|11358074|pir||T48005 hypothetical protein
T17J13.90 - Arabidopsis thaliana
gi|6899923|emb|CAB71873.1| putative protein [Arabidopsis
thaliana] gi|17064882|gb|AAL32595.1| putative protein
[Arabidopsis thaliana] gi|21555427|gb|AAM63856.1|
Similar to Streptomyces clavuligerus isopenicillin
epimerase (P18549) [Arabidopsis thaliana]
Length = 454
Score = 122 bits (306), Expect = 2e-27
Identities = 55/95 (57%), Positives = 77/95 (80%), Gaps = 1/95 (1%)
Frame = -1
Query: 495 CASMIMVGLPSRLCVLSDDDASRLRSYLRVYHAIEVPIYYQALRDAERDPRDKD-GIITG 319
C M+M+GLPS+LCV SD+DA +LRSYLRV++++EVP++Y LRD E +DKD G+IT
Sbjct: 357 CVGMVMIGLPSKLCVGSDEDAIKLRSYLRVHYSVEVPVFYLGLRDGEEGVKDKDSGLITA 416
Query: 318 YVRISYQVYNKDDDYHRLKNAINQLLEDRKICSDL 214
YVRIS+QVYNK +DY RL++AI +L++D+ C +L
Sbjct: 417 YVRISHQVYNKTEDYERLRDAITELVKDQMTCQNL 451
>ref|NP_198012.1| putative protein; protein id: At5g26595.1 [Arabidopsis thaliana]
Length = 475
Score = 97.8 bits (242), Expect = 6e-20
Identities = 52/94 (55%), Positives = 65/94 (68%)
Frame = -1
Query: 495 CASMIMVGLPSRLCVLSDDDASRLRSYLRVYHAIEVPIYYQALRDAERDPRDKDGIITGY 316
CASMIMVGLP L V S+ D +LR++LR IE+PIY++ D E DP ITGY
Sbjct: 386 CASMIMVGLPVCLGVSSESDVLKLRTFLREKFRIEIPIYFRPPGDGEIDP------ITGY 439
Query: 315 VRISYQVYNKDDDYHRLKNAINQLLEDRKICSDL 214
VRIS+QVYNK +DYHRL++AIN L+ D C+ L
Sbjct: 440 VRISFQVYNKPEDYHRLRDAINGLVRDGFKCTSL 473
>dbj|BAA96579.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 482
Score = 92.4 bits (228), Expect = 2e-18
Identities = 47/89 (52%), Positives = 65/89 (72%), Gaps = 2/89 (2%)
Frame = -1
Query: 495 CASMIMVGLPSRLCVLSDDDASRLRSYLRVYHAIEVPIYYQALR-DAERDPRDKDG-IIT 322
C SM+MVGLP L V SDDD R+R+ LR +EVPIYY + R +A+ +DK+G +T
Sbjct: 377 CGSMVMVGLPGCLGVESDDDVMRMRTMLRKDFMVEVPIYYNSRRVEAQEMAKDKNGDAVT 436
Query: 321 GYVRISYQVYNKDDDYHRLKNAINQLLED 235
GYVRIS+QVYN +DY +L++A+N+L+ D
Sbjct: 437 GYVRISHQVYNVTEDYEKLRDAVNKLVAD 465
>dbj|BAA96581.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|8468010|dbj|BAA96610.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 476
Score = 80.5 bits (197), Expect = 9e-15
Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Frame = -1
Query: 495 CASMIMVGLPSRLCVLSDDDASRLRSYLRVYHAIEVPIYYQALRDAERDPRD--KDG--- 331
C SM+MVGLP L V S+DDA LR+ LR +EVP+YY + A P + KDG
Sbjct: 371 CGSMLMVGLPGSLGVGSEDDAVGLRTMLRKQFKVEVPLYYNSKAAAADAPPEMVKDGNGD 430
Query: 330 IITGYVRISYQVYNKDDDYHRLKNAINQLLEDRKICSDL 214
+TGYVRIS+QVYN ++Y L++A+ +L+ D C L
Sbjct: 431 PVTGYVRISHQVYNVREEYEALRDAVAKLVADGFTCRKL 469
>dbj|BAB84909.1| FLJ00154 protein [Homo sapiens]
Length = 1471
Score = 34.7 bits (78), Expect = 0.60
Identities = 21/61 (34%), Positives = 37/61 (60%)
Frame = -1
Query: 408 VYHAIEVPIYYQALRDAERDPRDKDGIITGYVRISYQVYNKDDDYHRLKNAINQLLEDRK 229
V H I +L+ + ++P +K+GIITGY +IS++VY +++ RL + +N + K
Sbjct: 253 VGHLSFTEILDTSLKVSWQEPLEKNGIITGY-QISWEVYGRNNS--RLTHTLNSTTHEYK 309
Query: 228 I 226
I
Sbjct: 310 I 310
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,142,943
Number of Sequences: 1393205
Number of extensions: 9276714
Number of successful extensions: 22716
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 21928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22683
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
