Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017381A_C01 KMC017381A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42275.1| unknown protein [Arabidopsis thaliana] gi|288275... 97 1e-19
ref|NP_176990.1| unknown protein; protein id: At1g68230.1 [Arabi... 59 5e-08
ref|NP_566065.1| expressed protein; protein id: At2g46170.1, sup... 57 2e-07
ref|NP_179130.1| hypothetical protein; protein id: At2g15280.1 [... 55 4e-07
dbj|BAB32723.1| P0492F05.25 [Oryza sativa (japonica cultivar-gro... 54 2e-06
>dbj|BAC42275.1| unknown protein [Arabidopsis thaliana] gi|28827594|gb|AAO50641.1|
unknown protein [Arabidopsis thaliana]
Length = 226
Score = 97.4 bits (241), Expect = 1e-19
Identities = 42/62 (67%), Positives = 55/62 (87%)
Frame = -1
Query: 554 EEMVNNVAASFRVKINNVLLIAHDITIGKDFRVFFKVVVCLWLLSVIGSYFSFFTLAYIG 375
EEMVN+ AASFR+K+N++L++AHD+T+G DFR+FFKVV+CLWLLS IGSY S TL YIG
Sbjct: 113 EEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIG 172
Query: 374 SL 369
++
Sbjct: 173 TI 174
Score = 45.8 bits (107), Expect = 3e-04
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = -3
Query: 435 FVALVCHWQLLLL-----LHTRIYRIPL**LRSPRCTRKYGNYVDKCCGILPHRFSKHYR 271
F ++C W L + L T +Y + + P KY + VDKCCG + R S HY+
Sbjct: 147 FKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYK 206
Query: 270 IVDESVFNQ 244
IVDE+V ++
Sbjct: 207 IVDENVISR 215
>ref|NP_176990.1| unknown protein; protein id: At1g68230.1 [Arabidopsis thaliana]
gi|25404717|pir||G96705 unknown protein, 71680-70944
[imported] - Arabidopsis thaliana
gi|12325324|gb|AAG52605.1|AC016447_14 unknown protein;
71680-70944 [Arabidopsis thaliana]
Length = 151
Score = 58.5 bits (140), Expect = 5e-08
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = -1
Query: 515 KINNVLLIAHDITIGKDFRVFFKVVVCLWLLSVIGSYFSFFTLAYIG 375
KIN ++ +DI+ GKDFR+ F VV LW+LSV+G+YFS TL YIG
Sbjct: 103 KINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIG 149
>ref|NP_566065.1| expressed protein; protein id: At2g46170.1, supported by cDNA:
gi_15450758, supported by cDNA: gi_18491130 [Arabidopsis
thaliana] gi|25408969|pir||E84899 hypothetical protein
At2g46170 [imported] - Arabidopsis thaliana
gi|3702332|gb|AAC62889.1| expressed protein [Arabidopsis
thaliana] gi|15450759|gb|AAK96651.1| At2g46170/T3F17.18
[Arabidopsis thaliana] gi|18491131|gb|AAL69534.1|
At2g46170/T3F17.18 [Arabidopsis thaliana]
Length = 255
Score = 57.0 bits (136), Expect = 2e-07
Identities = 26/59 (44%), Positives = 39/59 (66%)
Frame = -1
Query: 554 EEMVNNVAASFRVKINNVLLIAHDITIGKDFRVFFKVVVCLWLLSVIGSYFSFFTLAYI 378
EE VA+S R ++N +I I +G+D + F VVV LW++SV+G++F+F TL YI
Sbjct: 140 EEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYI 198
>ref|NP_179130.1| hypothetical protein; protein id: At2g15280.1 [Arabidopsis
thaliana] gi|25411624|pir||A84527 hypothetical protein
At2g15280 [imported] - Arabidopsis thaliana
gi|4662633|gb|AAD26905.1| hypothetical protein
[Arabidopsis thaliana]
Length = 183
Score = 55.5 bits (132), Expect = 4e-07
Identities = 25/60 (41%), Positives = 40/60 (66%)
Frame = -1
Query: 554 EEMVNNVAASFRVKINNVLLIAHDITIGKDFRVFFKVVVCLWLLSVIGSYFSFFTLAYIG 375
EE V VA + RV IN VL +A +I +G++ + F+V V LW +S +G++ +F T+ Y+G
Sbjct: 68 EEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLG 127
>dbj|BAB32723.1| P0492F05.25 [Oryza sativa (japonica cultivar-group)]
gi|20804416|dbj|BAB92114.1| P0443E07.17 [Oryza sativa
(japonica cultivar-group)]
Length = 279
Score = 53.5 bits (127), Expect = 2e-06
Identities = 26/59 (44%), Positives = 36/59 (60%)
Frame = -1
Query: 554 EEMVNNVAASFRVKINNVLLIAHDITIGKDFRVFFKVVVCLWLLSVIGSYFSFFTLAYI 378
E++V N+A S R +IN I +G+D + F V+ LWLLSV+GS +F TL YI
Sbjct: 166 EDLVVNIALSTRYEINRAFANLRQIALGRDIKKFLIVIAGLWLLSVLGSCCNFLTLVYI 224
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,505,159
Number of Sequences: 1393205
Number of extensions: 9976849
Number of successful extensions: 22306
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 21693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22302
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
