Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017380A_C01 KMC017380A_c01
(641 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197312.1| eukaryotic cap-binding protein (gb|AAC17220.1);... 149 2e-35
pir||T52138 eukaryotic cap-binding protein [imported] - Arabidop... 149 2e-35
ref|NP_075803.1| RIKEN cDNA 2700069E09; DNA segment, human D0S67... 88 1e-16
ref|NP_508210.1| Initiation Factor 4E eIF4E family IFE-4 (24.6 k... 81 1e-14
gb|AAH49077.1| Similar to RIKEN cDNA 2700069E09 gene [Mus musculus] 74 2e-12
>ref|NP_197312.1| eukaryotic cap-binding protein (gb|AAC17220.1); protein id:
At5g18110.1, supported by cDNA: gi_20260129, supported
by cDNA: gi_20260617, supported by cDNA: gi_3108208
[Arabidopsis thaliana] gi|9758893|dbj|BAB09469.1|
eukaryotic cap-binding protein [Arabidopsis thaliana]
gi|20260130|gb|AAM12963.1| eukaryotic cap-binding
protein (gb|AAC17220.1) [Arabidopsis thaliana]
gi|20260618|gb|AAM13207.1| cap-binding protein
[Arabidopsis thaliana] gi|21386955|gb|AAM47881.1|
eukaryotic cap-binding protein [Arabidopsis thaliana]
Length = 221
Score = 149 bits (377), Expect = 2e-35
Identities = 69/75 (92%), Positives = 72/75 (96%)
Frame = -1
Query: 641 LDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDA 462
LD DNICGAVLS+RFNEDI+SVWNRNASDHQAVM LRDSIKRHLKLPH+YVMEYKPHDA
Sbjct: 147 LDDADNICGAVLSVRFNEDIISVWNRNASDHQAVMGLRDSIKRHLKLPHAYVMEYKPHDA 206
Query: 461 SLRDNSSYRNTWLRG 417
SLRDNSSYRNTWLRG
Sbjct: 207 SLRDNSSYRNTWLRG 221
>pir||T52138 eukaryotic cap-binding protein [imported] - Arabidopsis thaliana
gi|3108209|gb|AAC17220.1| novel cap-binding protein nCBP
[Arabidopsis thaliana]
Length = 221
Score = 149 bits (377), Expect = 2e-35
Identities = 69/75 (92%), Positives = 72/75 (96%)
Frame = -1
Query: 641 LDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDA 462
LD DNICGAVLS+RFNEDI+SVWNRNASDHQAVM LRDSIKRHLKLPH+YVMEYKPHDA
Sbjct: 147 LDDADNICGAVLSVRFNEDIISVWNRNASDHQAVMGLRDSIKRHLKLPHAYVMEYKPHDA 206
Query: 461 SLRDNSSYRNTWLRG 417
SLRDNSSYRNTWLRG
Sbjct: 207 SLRDNSSYRNTWLRG 221
>ref|NP_075803.1| RIKEN cDNA 2700069E09; DNA segment, human D0S6743E [Mus musculus]
gi|12858256|dbj|BAB31251.1| unnamed protein product [Mus
musculus]
Length = 234
Score = 87.8 bits (216), Expect = 1e-16
Identities = 37/68 (54%), Positives = 52/68 (76%)
Frame = -1
Query: 632 GDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLR 453
G+ ICGAV+S+RF EDI+S+WN+ ASD +RD+++R L LP + +MEYK H S++
Sbjct: 163 GEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIK 222
Query: 452 DNSSYRNT 429
DNSS+RNT
Sbjct: 223 DNSSFRNT 230
>ref|NP_508210.1| Initiation Factor 4E eIF4E family IFE-4 (24.6 kD) (ife-4)
[Caenorhabditis elegans] gi|2494316|sp|Q22888|IFE4_CAEEL
Eukaryotic translation initiation factor 4E (eIF-4E)
(eIF4E) (mRNA cap-binding protein) (eIF-4F 25 kDa
subunit) gi|7495442|pir||T31058 hypothetical protein
C05D9.5 - Caenorhabditis elegans
gi|7417028|gb|AAF62414.1|AF214651_1 translation
initiation factor eIF4E isoform 4 [Caenorhabditis
elegans] gi|9798124|gb|AAF98601.1| Initiation factor 4e
(eif4e) family protein 4 [Caenorhabditis elegans]
Length = 212
Score = 80.9 bits (198), Expect = 1e-14
Identities = 37/68 (54%), Positives = 49/68 (71%)
Frame = -1
Query: 632 GDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLR 453
GD +CGAV SIR EDI+S+WNRNA D +R++++ L+LP + V+EYK HD LR
Sbjct: 139 GDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQLPQNTVLEYKRHDDCLR 198
Query: 452 DNSSYRNT 429
D SSYR+T
Sbjct: 199 DQSSYRHT 206
>gb|AAH49077.1| Similar to RIKEN cDNA 2700069E09 gene [Mus musculus]
Length = 257
Score = 73.6 bits (179), Expect = 2e-12
Identities = 38/96 (39%), Positives = 55/96 (56%), Gaps = 5/96 (5%)
Frame = -1
Query: 632 GDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLR 453
G+ ICGAV+S+RF EDI+S+WN+ ASD +RD+++R L LP + +MEYK H S+
Sbjct: 163 GEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIA 222
Query: 452 DNSSYRNTWLRG*THYCVLVNV-----PAAGTLMLG 360
+ + C++VN P A T LG
Sbjct: 223 PQGTMS-------SKLCLMVNPLKVTRPHASTFPLG 251
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,412,914
Number of Sequences: 1393205
Number of extensions: 9220244
Number of successful extensions: 19246
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 18678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19213
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
