Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017378A_C01 KMC017378A_c01
(441 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F84586 hypothetical protein At2g20230 [imported] - Arabidop... 52 2e-06
ref|NP_565468.1| expressed protein; protein id: At2g20230.1, sup... 52 2e-06
gb|AAD09513.1| GMFP4 [Glycine max] 45 2e-04
ref|NP_194606.1| putative protein; protein id: At4g28770.1, supp... 40 0.009
dbj|BAC65018.1| P0498E12.14 [Oryza sativa (japonica cultivar-gro... 36 0.095
>pir||F84586 hypothetical protein At2g20230 [imported] - Arabidopsis thaliana
gi|17978753|gb|AAL47370.1| unknown protein [Arabidopsis
thaliana]
Length = 236
Score = 52.0 bits (123), Expect = 2e-06
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = -3
Query: 439 ILRAPISTRRADFDYE-DEYDVRGRSWEPLLNPPSGQ-PSGSGKVDNRGNPSDIWSSRMR 266
+LRA +ST + + D E D+ + R R+W+PLL P Q P+GS K++N WSSR+R
Sbjct: 169 VLRAMVSTPKPELDEEEDDENPRSRTWDPLLGPQGNQAPAGSSKIEN-------WSSRIR 221
Query: 265 EK 260
EK
Sbjct: 222 EK 223
>ref|NP_565468.1| expressed protein; protein id: At2g20230.1, supported by cDNA:
6967., supported by cDNA: gi_15450979 [Arabidopsis
thaliana] gi|15450980|gb|AAK96761.1| Unknown protein
[Arabidopsis thaliana] gi|20197855|gb|AAD21765.2|
expressed protein [Arabidopsis thaliana]
gi|21594467|gb|AAM66011.1| unknown [Arabidopsis
thaliana]
Length = 270
Score = 52.0 bits (123), Expect = 2e-06
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = -3
Query: 439 ILRAPISTRRADFDYE-DEYDVRGRSWEPLLNPPSGQ-PSGSGKVDNRGNPSDIWSSRMR 266
+LRA +ST + + D E D+ + R R+W+PLL P Q P+GS K++N WSSR+R
Sbjct: 203 VLRAMVSTPKPELDEEEDDENPRSRTWDPLLGPQGNQAPAGSSKIEN-------WSSRIR 255
Query: 265 EK 260
EK
Sbjct: 256 EK 257
>gb|AAD09513.1| GMFP4 [Glycine max]
Length = 111
Score = 45.1 bits (105), Expect = 2e-04
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Frame = -3
Query: 439 ILRAPISTRRADFDYEDEY-DVRGRSWEPLLNPPSGQPSGS---GKVDNRGNPSDIWSSR 272
I+RA + R ++D ++EY + R ++ +P LN P+G SG+ G +D R + +D WS+R
Sbjct: 15 IVRA--ANRPTEYDSDEEYINPRQQARQPFLNRPAGPVSGAPATGTLDQRPSRNDAWSTR 72
Query: 271 MREK 260
MREK
Sbjct: 73 MREK 76
>ref|NP_194606.1| putative protein; protein id: At4g28770.1, supported by cDNA: 1968.
[Arabidopsis thaliana] gi|7485528|pir||T04522
hypothetical protein F16A16.120 - Arabidopsis thaliana
gi|4218121|emb|CAA22975.1| putative protein [Arabidopsis
thaliana] gi|7269732|emb|CAB81465.1| putative protein
[Arabidopsis thaliana] gi|21554050|gb|AAM63131.1|
unknown [Arabidopsis thaliana]
gi|29029076|gb|AAO64917.1| At4g28770 [Arabidopsis
thaliana]
Length = 281
Score = 39.7 bits (91), Expect = 0.009
Identities = 24/62 (38%), Positives = 37/62 (58%), Gaps = 2/62 (3%)
Frame = -3
Query: 439 ILRAPISTRRADFDYEDEYD-VRGRSWEPLLNPPSGQ-PSGSGKVDNRGNPSDIWSSRMR 266
+LRA +S R+++ D ED+++ R+ + LL P + Q SGS +DN W SR+R
Sbjct: 214 VLRAMVSPRQSELDDEDDFENPMSRARDNLLGPQANQTSSGSSNIDN-------WRSRIR 266
Query: 265 EK 260
EK
Sbjct: 267 EK 268
>dbj|BAC65018.1| P0498E12.14 [Oryza sativa (japonica cultivar-group)]
Length = 249
Score = 36.2 bits (82), Expect = 0.095
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 421 STRRADFDYEDEYDV-RGRSWEPLLNPPSGQPSGSGKVDNRGNPSDIWSSRMREKVRI*T 245
S +AD+D +DEY R + +PL+N +D R +D WS RMREK + T
Sbjct: 167 SGNQADYDSDDEYIAPRSSTRQPLVNKQPVADPRVPNLDYRPIRNDAWSQRMREKYGVDT 226
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,554,592
Number of Sequences: 1393205
Number of extensions: 8242203
Number of successful extensions: 19350
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 18664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19325
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
