Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017355A_C01 KMC017355A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10923.1| GTP-binding protein-like [Arabidopsis thaliana] 145 5e-34
ref|NP_201448.2| GTP-binding protein-like; protein id: At5g66470... 145 5e-34
ref|NP_661193.1| GTP-binding protein, Era/ThdF family [Chlorobiu... 84 2e-15
gb|ZP_00038051.1| hypothetical protein [Enterococcus faecium] 75 6e-13
gb|AAO82129.1| GTP-binding protein Era [Enterococcus faecalis V583] 75 8e-13
>dbj|BAB10923.1| GTP-binding protein-like [Arabidopsis thaliana]
Length = 353
Score = 145 bits (365), Expect = 5e-34
Identities = 69/85 (81%), Positives = 80/85 (93%)
Frame = -3
Query: 574 SYKARPNAKDFIQVEILVEKNSQKMIVIGREGKALKLLATASRLDIEDFLQKKVYLEIEV 395
SYK RP AKDFIQVE++V+KNSQK+I+IG+EGKALK LATA+RLDIEDFLQKKV+LE+EV
Sbjct: 269 SYKTRPAAKDFIQVEVVVDKNSQKIILIGKEGKALKTLATAARLDIEDFLQKKVFLEVEV 328
Query: 394 KVRENWRQDEGLLKDYGYGGQIRVL 320
KV+ENWRQDEGLLK YGYGGQIR +
Sbjct: 329 KVKENWRQDEGLLKYYGYGGQIRAM 353
>ref|NP_201448.2| GTP-binding protein-like; protein id: At5g66470.1, supported by
cDNA: gi_17473913, supported by cDNA: gi_20259793
[Arabidopsis thaliana] gi|17473914|gb|AAL38371.1|
GTP-binding protein-like [Arabidopsis thaliana]
gi|20259794|gb|AAM13244.1| GTP-binding protein-like
[Arabidopsis thaliana]
Length = 427
Score = 145 bits (365), Expect = 5e-34
Identities = 69/85 (81%), Positives = 80/85 (93%)
Frame = -3
Query: 574 SYKARPNAKDFIQVEILVEKNSQKMIVIGREGKALKLLATASRLDIEDFLQKKVYLEIEV 395
SYK RP AKDFIQVE++V+KNSQK+I+IG+EGKALK LATA+RLDIEDFLQKKV+LE+EV
Sbjct: 343 SYKTRPAAKDFIQVEVVVDKNSQKIILIGKEGKALKTLATAARLDIEDFLQKKVFLEVEV 402
Query: 394 KVRENWRQDEGLLKDYGYGGQIRVL 320
KV+ENWRQDEGLLK YGYGGQIR +
Sbjct: 403 KVKENWRQDEGLLKYYGYGGQIRAM 427
>ref|NP_661193.1| GTP-binding protein, Era/ThdF family [Chlorobium tepidum TLS]
gi|21646203|gb|AAM71535.1| GTP-binding protein, Era/ThdF
family [Chlorobium tepidum TLS]
Length = 305
Score = 83.6 bits (205), Expect = 2e-15
Identities = 37/77 (48%), Positives = 57/77 (73%)
Frame = -3
Query: 571 YKARPNAKDFIQVEILVEKNSQKMIVIGREGKALKLLATASRLDIEDFLQKKVYLEIEVK 392
++ P+ K+ I+ ++VE+NSQK I++G++G A+K L A+R +IE+ L + VYLEI VK
Sbjct: 229 HENNPSRKELIRCSVIVERNSQKQIIVGQKGAAIKKLGQAARKEIEELLDRPVYLEIFVK 288
Query: 391 VRENWRQDEGLLKDYGY 341
VR +WR+ + LLK YGY
Sbjct: 289 VRPDWRKKKNLLKSYGY 305
>gb|ZP_00038051.1| hypothetical protein [Enterococcus faecium]
Length = 299
Score = 75.1 bits (183), Expect = 6e-13
Identities = 38/78 (48%), Positives = 54/78 (68%)
Frame = -3
Query: 574 SYKARPNAKDFIQVEILVEKNSQKMIVIGREGKALKLLATASRLDIEDFLQKKVYLEIEV 395
S K N K IQ I+VE++SQK I+IG+ GK LK + T +R DIE+ L KV+LE+ V
Sbjct: 217 SMKRNENDKIHIQATIIVERDSQKGIIIGKGGKMLKQVGTKARKDIENLLGDKVFLELWV 276
Query: 394 KVRENWRQDEGLLKDYGY 341
KV+++WR + L+D+GY
Sbjct: 277 KVQKDWRDKKVYLQDFGY 294
>gb|AAO82129.1| GTP-binding protein Era [Enterococcus faecalis V583]
Length = 300
Score = 74.7 bits (182), Expect = 8e-13
Identities = 38/78 (48%), Positives = 53/78 (67%)
Frame = -3
Query: 574 SYKARPNAKDFIQVEILVEKNSQKMIVIGREGKALKLLATASRLDIEDFLQKKVYLEIEV 395
S K N K +Q I+VE++SQK I+IG+ GK LK + T +R DIE L KVYLE+ V
Sbjct: 218 SMKRDENDKVHVQATIIVERDSQKGIIIGKGGKMLKQIGTKARQDIEYLLDDKVYLELWV 277
Query: 394 KVRENWRQDEGLLKDYGY 341
KV+++WR + L+D+GY
Sbjct: 278 KVQKDWRDKKIYLQDFGY 295
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,650,313
Number of Sequences: 1393205
Number of extensions: 8782022
Number of successful extensions: 17905
Number of sequences better than 10.0: 144
Number of HSP's better than 10.0 without gapping: 17620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17902
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
