KMC017350A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC017350A_C01 KMC017350A_c01
aataaatagtaaaagtaaaaatACAAAGACTCTTACAATAAGATAAAATAAAATAGAAAG
GCTCTACAATGGTGAAACTGAACTCTCATGGTAAATATACATATAATGCCTATAATGCCT
ATTACCCGGGCTCATGATCTCAGGATAATCCAACTTGCCATTCACTGCGTTATACATGAC
TAATTGTAATTTGAAATGATCAGAATCCACCTCCATCAAAACTAGGCCATTTTCTGAAAT
GCACAAGGGGCGAATGTGAAGAAAAGCACCAATGGGCCCTGnAATCTTGCAACGAGGGAT
CGAAATCAATTTAGACCAAGACTCTTGAATGCCATACATATTAATGGACCACAGAACACA
ATGCATATCATTTAAGTAACACAAACAAAGA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC017350A_C01 KMC017350A_c01
         (391 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_189030.1| F-box protein family; protein id: At3g23880.1 [...    50  7e-06
dbj|BAC42921.1| unknown protein [Arabidopsis thaliana]                 35  0.17
ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, ...    35  0.17
ref|NP_566322.1| F-box protein family; protein id: At3g07870.1, ...    35  0.23
ref|NP_193970.1| putative protein; protein id: At4g22390.1 [Arab...    33  0.66

>ref|NP_189030.1| F-box protein family; protein id: At3g23880.1 [Arabidopsis
           thaliana] gi|9294656|dbj|BAB03005.1|
           gb|AAF30317.1~gene_id:F14O13.6~similar to unknown
           protein [Arabidopsis thaliana]
           gi|26449693|dbj|BAC41970.1| unknown protein [Arabidopsis
           thaliana]
          Length = 364

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 29/81 (35%), Positives = 42/81 (51%)
 Frame = -2

Query: 384 LCYLNDMHCVLWSINMYGIQESWSKLISIPRCKIXGPIGAFLHIRPLCISENGLVLMEVD 205
           +CY    +  +W +  +G   SWSKL+SIP        G    +RPL IS+  +VL+E  
Sbjct: 273 VCYCKGANADVWVMKEFGEVYSWSKLLSIP--------GLTDFVRPLWISDGLVVLLE-- 322

Query: 204 SDHFKLQLVMYNAVNGKLDYP 142
              F+  L +YN  NG+  YP
Sbjct: 323 ---FRSGLALYNCSNGRFHYP 340

>dbj|BAC42921.1| unknown protein [Arabidopsis thaliana]
          Length = 427

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 25/76 (32%), Positives = 42/76 (54%), Gaps = 4/76 (5%)
 Frame = -2

Query: 384 LCYLN---DMHCVLWSINMYGIQESWSKLISIPRCKIXGPIGAFLHIRPLCISENG-LVL 217
           LC +N   D+H  +W ++ YG  +SWS++    R  +      +  ++PLC ++N   VL
Sbjct: 327 LCVVNSCYDVHDDIWVMSEYGEAKSWSRI----RINL-----LYRSMKPLCSTKNDEEVL 377

Query: 216 MEVDSDHFKLQLVMYN 169
           +E+D D     LV+YN
Sbjct: 378 LELDGD-----LVLYN 388

>ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, supported by cDNA:
           108003. [Arabidopsis thaliana]
           gi|6862928|gb|AAF30317.1|AC018907_17 hypothetical
           protein [Arabidopsis thaliana]
           gi|21536665|gb|AAM60997.1| unknown [Arabidopsis
           thaliana]
          Length = 416

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 25/76 (32%), Positives = 42/76 (54%), Gaps = 4/76 (5%)
 Frame = -2

Query: 384 LCYLN---DMHCVLWSINMYGIQESWSKLISIPRCKIXGPIGAFLHIRPLCISENG-LVL 217
           LC +N   D+H  +W ++ YG  +SWS++    R  +      +  ++PLC ++N   VL
Sbjct: 316 LCVVNSCYDVHDDIWVMSEYGEAKSWSRI----RINL-----LYRSMKPLCSTKNDEEVL 366

Query: 216 MEVDSDHFKLQLVMYN 169
           +E+D D     LV+YN
Sbjct: 367 LELDGD-----LVLYN 377

>ref|NP_566322.1| F-box protein family; protein id: At3g07870.1, supported by cDNA:
           gi_15983478 [Arabidopsis thaliana]
           gi|6648199|gb|AAF21197.1|AC013483_21 unknown protein
           [Arabidopsis thaliana]
           gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
           [Arabidopsis thaliana]
          Length = 417

 Score = 35.0 bits (79), Expect = 0.23
 Identities = 29/94 (30%), Positives = 43/94 (44%), Gaps = 16/94 (17%)
 Frame = -2

Query: 387 CLC---YLNDMHCVLWSINMYGIQESWSKLISIP-------RCKIXGPIGAFLH------ 256
           CLC   Y N     +W +  YG++ESW K  SI        +  +  P+  + +      
Sbjct: 296 CLCAVVYGNYGKLDIWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKV 355

Query: 255 IRPLCISENGLVLMEVDSDHFKLQLVMYNAVNGK 154
           +R LC+ ENG +L+E  S      LV Y+   GK
Sbjct: 356 VRVLCLLENGEILLEYKS----RVLVAYDPKLGK 385

>ref|NP_193970.1| putative protein; protein id: At4g22390.1 [Arabidopsis thaliana]
           gi|25407584|pir||D85256 hypothetical protein AT4g22390
           [imported] - Arabidopsis thaliana
           gi|5738370|emb|CAB52813.1| putative protein [Arabidopsis
           thaliana] gi|7269085|emb|CAB79194.1| putative protein
           [Arabidopsis thaliana]
          Length = 394

 Score = 33.5 bits (75), Expect = 0.66
 Identities = 17/62 (27%), Positives = 33/62 (52%), Gaps = 1/62 (1%)
 Frame = -2

Query: 384 LCYLNDMHCVLWSINMYGIQESWSKLISIPRCKIXGPIGAFLHIRPL-CISENGLVLMEV 208
           +CY    H  +W +  Y   +SW+KL  +P+ +    + +   IRPL C  +   +L+E+
Sbjct: 271 MCYDEYSHVDVWVLKEYEDYKSWTKLYRVPKPE---SVESVEFIRPLICSKDRSKILLEI 327

Query: 207 DS 202
           ++
Sbjct: 328 NN 329

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 336,187,384
Number of Sequences: 1393205
Number of extensions: 6937987
Number of successful extensions: 18879
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18871
length of database: 448,689,247
effective HSP length: 105
effective length of database: 302,402,722
effective search space used: 7257665328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPD007c11_f BP044545 1 391
2 SPD099f10_f BP051920 23 239




Lotus japonicus
Kazusa DNA Research Institute