KMC017350A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC017350A_C01 KMC017350A_c01
aataaatagtaaaagtaaaaatACAAAGACTCTTACAATAAGATAAAATAAAATAGAAAG
GCTCTACAATGGTGAAACTGAACTCTCATGGTAAATATACATATAATGCCTATAATGCCT
ATTACCCGGGCTCATGATCTCAGGATAATCCAACTTGCCATTCACTGCGTTATACATGAC
TAATTGTAATTTGAAATGATCAGAATCCACCTCCATCAAAACTAGGCCATTTTCTGAAAT
GCACAAGGGGCGAATGTGAAGAAAAGCACCAATGGGCCCTGnAATCTTGCAACGAGGGAT
CGAAATCAATTTAGACCAAGACTCTTGAATGCCATACATATTAATGGACCACAGAACACA
ATGCATATCATTTAAGTAACACAAACAAAGA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017350A_C01 KMC017350A_c01
(391 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189030.1| F-box protein family; protein id: At3g23880.1 [... 50 7e-06
dbj|BAC42921.1| unknown protein [Arabidopsis thaliana] 35 0.17
ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, ... 35 0.17
ref|NP_566322.1| F-box protein family; protein id: At3g07870.1, ... 35 0.23
ref|NP_193970.1| putative protein; protein id: At4g22390.1 [Arab... 33 0.66
>ref|NP_189030.1| F-box protein family; protein id: At3g23880.1 [Arabidopsis
thaliana] gi|9294656|dbj|BAB03005.1|
gb|AAF30317.1~gene_id:F14O13.6~similar to unknown
protein [Arabidopsis thaliana]
gi|26449693|dbj|BAC41970.1| unknown protein [Arabidopsis
thaliana]
Length = 364
Score = 50.1 bits (118), Expect = 7e-06
Identities = 29/81 (35%), Positives = 42/81 (51%)
Frame = -2
Query: 384 LCYLNDMHCVLWSINMYGIQESWSKLISIPRCKIXGPIGAFLHIRPLCISENGLVLMEVD 205
+CY + +W + +G SWSKL+SIP G +RPL IS+ +VL+E
Sbjct: 273 VCYCKGANADVWVMKEFGEVYSWSKLLSIP--------GLTDFVRPLWISDGLVVLLE-- 322
Query: 204 SDHFKLQLVMYNAVNGKLDYP 142
F+ L +YN NG+ YP
Sbjct: 323 ---FRSGLALYNCSNGRFHYP 340
>dbj|BAC42921.1| unknown protein [Arabidopsis thaliana]
Length = 427
Score = 35.4 bits (80), Expect = 0.17
Identities = 25/76 (32%), Positives = 42/76 (54%), Gaps = 4/76 (5%)
Frame = -2
Query: 384 LCYLN---DMHCVLWSINMYGIQESWSKLISIPRCKIXGPIGAFLHIRPLCISENG-LVL 217
LC +N D+H +W ++ YG +SWS++ R + + ++PLC ++N VL
Sbjct: 327 LCVVNSCYDVHDDIWVMSEYGEAKSWSRI----RINL-----LYRSMKPLCSTKNDEEVL 377
Query: 216 MEVDSDHFKLQLVMYN 169
+E+D D LV+YN
Sbjct: 378 LELDGD-----LVLYN 388
>ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, supported by cDNA:
108003. [Arabidopsis thaliana]
gi|6862928|gb|AAF30317.1|AC018907_17 hypothetical
protein [Arabidopsis thaliana]
gi|21536665|gb|AAM60997.1| unknown [Arabidopsis
thaliana]
Length = 416
Score = 35.4 bits (80), Expect = 0.17
Identities = 25/76 (32%), Positives = 42/76 (54%), Gaps = 4/76 (5%)
Frame = -2
Query: 384 LCYLN---DMHCVLWSINMYGIQESWSKLISIPRCKIXGPIGAFLHIRPLCISENG-LVL 217
LC +N D+H +W ++ YG +SWS++ R + + ++PLC ++N VL
Sbjct: 316 LCVVNSCYDVHDDIWVMSEYGEAKSWSRI----RINL-----LYRSMKPLCSTKNDEEVL 366
Query: 216 MEVDSDHFKLQLVMYN 169
+E+D D LV+YN
Sbjct: 367 LELDGD-----LVLYN 377
>ref|NP_566322.1| F-box protein family; protein id: At3g07870.1, supported by cDNA:
gi_15983478 [Arabidopsis thaliana]
gi|6648199|gb|AAF21197.1|AC013483_21 unknown protein
[Arabidopsis thaliana]
gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
[Arabidopsis thaliana]
Length = 417
Score = 35.0 bits (79), Expect = 0.23
Identities = 29/94 (30%), Positives = 43/94 (44%), Gaps = 16/94 (17%)
Frame = -2
Query: 387 CLC---YLNDMHCVLWSINMYGIQESWSKLISIP-------RCKIXGPIGAFLH------ 256
CLC Y N +W + YG++ESW K SI + + P+ + +
Sbjct: 296 CLCAVVYGNYGKLDIWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKV 355
Query: 255 IRPLCISENGLVLMEVDSDHFKLQLVMYNAVNGK 154
+R LC+ ENG +L+E S LV Y+ GK
Sbjct: 356 VRVLCLLENGEILLEYKS----RVLVAYDPKLGK 385
>ref|NP_193970.1| putative protein; protein id: At4g22390.1 [Arabidopsis thaliana]
gi|25407584|pir||D85256 hypothetical protein AT4g22390
[imported] - Arabidopsis thaliana
gi|5738370|emb|CAB52813.1| putative protein [Arabidopsis
thaliana] gi|7269085|emb|CAB79194.1| putative protein
[Arabidopsis thaliana]
Length = 394
Score = 33.5 bits (75), Expect = 0.66
Identities = 17/62 (27%), Positives = 33/62 (52%), Gaps = 1/62 (1%)
Frame = -2
Query: 384 LCYLNDMHCVLWSINMYGIQESWSKLISIPRCKIXGPIGAFLHIRPL-CISENGLVLMEV 208
+CY H +W + Y +SW+KL +P+ + + + IRPL C + +L+E+
Sbjct: 271 MCYDEYSHVDVWVLKEYEDYKSWTKLYRVPKPE---SVESVEFIRPLICSKDRSKILLEI 327
Query: 207 DS 202
++
Sbjct: 328 NN 329
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 336,187,384
Number of Sequences: 1393205
Number of extensions: 6937987
Number of successful extensions: 18879
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18871
length of database: 448,689,247
effective HSP length: 105
effective length of database: 302,402,722
effective search space used: 7257665328
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
SPD007c11_f |
BP044545 |
1 |
391 |
2 |
SPD099f10_f |
BP051920 |
23 |
239 |
|
Lotus japonicus
Kazusa DNA Research Institute