Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017344A_C01 KMC017344A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB32914.1| P0666G04.16 [Oryza sativa (japonica cultivar-gro... 171 4e-42
gb|AAK26765.1| small basic membrane integral protein ZmSIP1-2 [Z... 162 2e-39
gb|AAK26764.1| small basic membrane integral protein ZmSIP1-1 [Z... 152 3e-36
ref|NP_187059.1| hypothetical protein; protein id: At3g04090.1 [... 140 1e-32
ref|NP_197330.1| putative protein; protein id: At5g18290.1 [Arab... 135 2e-31
>dbj|BAB32914.1| P0666G04.16 [Oryza sativa (japonica cultivar-group)]
Length = 246
Score = 171 bits (434), Expect = 4e-42
Identities = 74/102 (72%), Positives = 92/102 (89%)
Frame = -3
Query: 530 LLTFVITFAVLFIILKGPRSGLMKTWLLAMSTVTLVMVGSAYTGPAMNPANAFGWAYLNN 351
+LTFVIT AVL+II+KGPR+ ++KTW+L++STV LV+ G+AYTGP+MNPANAFGWAY+NN
Sbjct: 145 VLTFVITLAVLWIIVKGPRNPIVKTWMLSISTVCLVLTGAAYTGPSMNPANAFGWAYVNN 204
Query: 350 IHNTWDQFYVYWICPFTGAILAAWLFRAIFPPPPVEVKQKKA 225
HNTW+QFYVYWICPF GA+LAAW+FRA+FPPP + K KKA
Sbjct: 205 RHNTWEQFYVYWICPFVGAVLAAWVFRAVFPPPAPKPKAKKA 246
>gb|AAK26765.1| small basic membrane integral protein ZmSIP1-2 [Zea mays]
Length = 243
Score = 162 bits (410), Expect = 2e-39
Identities = 71/102 (69%), Positives = 89/102 (86%)
Frame = -3
Query: 530 LLTFVITFAVLFIILKGPRSGLMKTWLLAMSTVTLVMVGSAYTGPAMNPANAFGWAYLNN 351
+LTFVIT AVL II+KGPR+ ++KTW++++ T+ LV+ G+AYTGP+MNPANAFGWAY+NN
Sbjct: 142 VLTFVITLAVLLIIVKGPRNPIIKTWMISICTLCLVLSGAAYTGPSMNPANAFGWAYVNN 201
Query: 350 IHNTWDQFYVYWICPFTGAILAAWLFRAIFPPPPVEVKQKKA 225
HNTW+QFYVYWICPF GAILAAW+FRA+F PP + K KKA
Sbjct: 202 RHNTWEQFYVYWICPFIGAILAAWIFRAMFLTPPPKPKAKKA 243
>gb|AAK26764.1| small basic membrane integral protein ZmSIP1-1 [Zea mays]
Length = 245
Score = 152 bits (383), Expect = 3e-36
Identities = 65/103 (63%), Positives = 85/103 (82%)
Frame = -3
Query: 533 GLLTFVITFAVLFIILKGPRSGLMKTWLLAMSTVTLVMVGSAYTGPAMNPANAFGWAYLN 354
G+LTFVIT VL++I+KGPR+ ++KT LL+ S V++++ G+ YTGP+MNPANAFGWAY+N
Sbjct: 143 GVLTFVITLTVLWVIVKGPRNVILKTLLLSTSIVSVILAGAEYTGPSMNPANAFGWAYVN 202
Query: 353 NIHNTWDQFYVYWICPFTGAILAAWLFRAIFPPPPVEVKQKKA 225
N HNTW+Q YVYWICPF GA+LA W+FR +F PP + K KKA
Sbjct: 203 NWHNTWEQLYVYWICPFIGAMLAGWIFRVVFLPPAPKPKTKKA 245
>ref|NP_187059.1| hypothetical protein; protein id: At3g04090.1 [Arabidopsis
thaliana] gi|6721176|gb|AAF26804.1|AC016829_28
hypothetical protein [Arabidopsis thaliana]
Length = 240
Score = 140 bits (353), Expect = 1e-32
Identities = 68/103 (66%), Positives = 82/103 (79%), Gaps = 1/103 (0%)
Frame = -3
Query: 530 LLTFVITFAVLFIILKGPRSGLMKTWLLAMSTVTLVMVGSAYTGPAMNPANAFGWAYLNN 351
+L+F ITFAVL IIL+GPR L KT+LLA++T++ V+ GS YTGPAMNPA AFGWAY+ +
Sbjct: 138 ILSFGITFAVLLIILRGPRRLLAKTFLLALATISFVVAGSKYTGPAMNPAIAFGWAYMYS 197
Query: 350 IHNTWDQFYVYWICPFTGAILAAWLFRAIFPPP-PVEVKQKKA 225
HNTWD YVYWI F GA+ AA LFR+IFPPP P + KQKKA
Sbjct: 198 SHNTWDHIYVYWISSFVGALSAALLFRSIFPPPRPQKKKQKKA 240
>ref|NP_197330.1| putative protein; protein id: At5g18290.1 [Arabidopsis thaliana]
gi|9758911|dbj|BAB09487.1|
gb|AAF26804.1~gene_id:MRG7.25~similar to unknown protein
[Arabidopsis thaliana] gi|26450763|dbj|BAC42490.1|
unknown protein [Arabidopsis thaliana]
gi|28950807|gb|AAO63327.1| At5g18290 [Arabidopsis
thaliana]
Length = 243
Score = 135 bits (341), Expect = 2e-31
Identities = 66/103 (64%), Positives = 81/103 (78%), Gaps = 1/103 (0%)
Frame = -3
Query: 530 LLTFVITFAVLFIILKGPRSGLMKTWLLAMSTVTLVMVGSAYTGPAMNPANAFGWAYLNN 351
+L+F +TF VL IIL+GPR L KT+LLA++TV++ +VGS +T P MNPA AFGWAY+
Sbjct: 141 VLSFSVTFLVLLIILRGPRKLLAKTFLLALATVSVFVVGSKFTRPFMNPAIAFGWAYIYK 200
Query: 350 IHNTWDQFYVYWICPFTGAILAAWLFRAIFPPPP-VEVKQKKA 225
HNTWD FYVYWI +TGAIL+A LFR IFP PP V+ KQKKA
Sbjct: 201 SHNTWDHFYVYWISSYTGAILSAMLFRIIFPAPPLVQKKQKKA 243
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,527,753
Number of Sequences: 1393205
Number of extensions: 11151601
Number of successful extensions: 28361
Number of sequences better than 10.0: 481
Number of HSP's better than 10.0 without gapping: 27366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28213
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
