Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017342A_C01 KMC017342A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM20433.1| cell cycle switch protein [Arabidopsis thaliana] ... 285 3e-76
ref|NP_196888.1| fizzy-related (FZR), putative; protein id: At5g... 253 2e-66
gb|AAL36231.1| putative Srw1 protein [Arabidopsis thaliana] gi|2... 238 4e-62
gb|AAD22612.1| cell cycle switch protein [Medicago sativa subsp.... 236 2e-61
gb|AAF37386.1|AF134835_1 WD-repeat cell cycle regulatory protein... 236 2e-61
>gb|AAM20433.1| cell cycle switch protein [Arabidopsis thaliana]
gi|25084105|gb|AAN72176.1| cell cycle switch protein
[Arabidopsis thaliana]
Length = 481
Score = 285 bits (729), Expect = 3e-76
Identities = 134/148 (90%), Positives = 141/148 (94%)
Frame = -2
Query: 572 LRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNHVDTGSQVCNLAWS 393
L+LTEHTAAVKAI WSPHQS+LL SGGGTADRCIRFWNTTNG+QLN +DTGSQVCNLAWS
Sbjct: 334 LKLTEHTAAVKAITWSPHQSSLLASGGGTADRCIRFWNTTNGNQLNSIDTGSQVCNLAWS 393
Query: 392 KNVNEIVSTHGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLR 213
KNVNEIVSTHGYSQNQIM+WKYPS+SKVATLTGHSMRVLYLA SPDGQTIVTGAGDETLR
Sbjct: 394 KNVNEIVSTHGYSQNQIMLWKYPSMSKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLR 453
Query: 212 FWNVFPSMKTPAPVKDTGLWSLGRTQIR 129
FWNVFPS+K PVKDTGLWSLGRTQIR
Sbjct: 454 FWNVFPSVKMQTPVKDTGLWSLGRTQIR 481
Score = 50.1 bits (118), Expect = 2e-05
Identities = 26/75 (34%), Positives = 39/75 (51%), Gaps = 3/75 (4%)
Frame = -2
Query: 419 SQVCNLAWSKNVNEIVSTHGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIV 240
S+VC L WS + E+ S G + NQ++VW S + LT H+ V + SP +++
Sbjct: 299 SEVCGLKWSHDDRELAS--GGNDNQLLVWNNHSQQPILKLTEHTAAVKAITWSPHQSSLL 356
Query: 239 T---GAGDETLRFWN 204
G D +RFWN
Sbjct: 357 ASGGGTADRCIRFWN 371
Score = 37.0 bits (84), Expect = 0.18
Identities = 35/157 (22%), Positives = 51/157 (32%), Gaps = 43/157 (27%)
Frame = -2
Query: 545 VKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNHVDTG--SQVCNLAWSKNVNEIV 372
+ + WS N+L G GT C+ W +N D G VC++ W++ + I
Sbjct: 177 LNVVDWS--SQNVLAVGLGT---CVYLWTASNSKVTKLCDLGPNDSVCSVQWTREGSYI- 230
Query: 371 STHGYSQNQIMVWKYPSLSKVAT------------------------------------- 303
+ G S Q+ VW +V T
Sbjct: 231 -SIGTSHGQVQVWDGTQCKRVRTMGGHQTRTGVLAWNSRILSSGSRDRNILQHDIRVQSD 289
Query: 302 ----LTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWN 204
L GH V L S D + + +G D L WN
Sbjct: 290 FVSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 326
>ref|NP_196888.1| fizzy-related (FZR), putative; protein id: At5g13840.1 [Arabidopsis
thaliana] gi|10177650|dbj|BAB11112.1| cell cycle switch
protein [Arabidopsis thaliana]
Length = 472
Score = 253 bits (645), Expect = 2e-66
Identities = 118/129 (91%), Positives = 125/129 (96%)
Frame = -2
Query: 572 LRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNHVDTGSQVCNLAWS 393
L+LTEHTAAVKAI WSPHQS+LL SGGGTADRCIRFWNTTNG+QLN +DTGSQVCNLAWS
Sbjct: 334 LKLTEHTAAVKAITWSPHQSSLLASGGGTADRCIRFWNTTNGNQLNSIDTGSQVCNLAWS 393
Query: 392 KNVNEIVSTHGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLR 213
KNVNEIVSTHGYSQNQIM+WKYPS+SKVATLTGHSMRVLYLA SPDGQTIVTGAGDETLR
Sbjct: 394 KNVNEIVSTHGYSQNQIMLWKYPSMSKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLR 453
Query: 212 FWNVFPSMK 186
FWNVFPS+K
Sbjct: 454 FWNVFPSVK 462
Score = 50.1 bits (118), Expect = 2e-05
Identities = 26/75 (34%), Positives = 39/75 (51%), Gaps = 3/75 (4%)
Frame = -2
Query: 419 SQVCNLAWSKNVNEIVSTHGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIV 240
S+VC L WS + E+ S G + NQ++VW S + LT H+ V + SP +++
Sbjct: 299 SEVCGLKWSHDDRELAS--GGNDNQLLVWNNHSQQPILKLTEHTAAVKAITWSPHQSSLL 356
Query: 239 T---GAGDETLRFWN 204
G D +RFWN
Sbjct: 357 ASGGGTADRCIRFWN 371
Score = 37.0 bits (84), Expect = 0.18
Identities = 35/157 (22%), Positives = 51/157 (32%), Gaps = 43/157 (27%)
Frame = -2
Query: 545 VKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNHVDTG--SQVCNLAWSKNVNEIV 372
+ + WS N+L G GT C+ W +N D G VC++ W++ + I
Sbjct: 177 LNVVDWS--SQNVLAVGLGT---CVYLWTASNSKVTKLCDLGPNDSVCSVQWTREGSYI- 230
Query: 371 STHGYSQNQIMVWKYPSLSKVAT------------------------------------- 303
+ G S Q+ VW +V T
Sbjct: 231 -SIGTSHGQVQVWDGTQCKRVRTMGGHQTRTGVLAWNSRILSSGSRDRNILQHDIRVQSD 289
Query: 302 ----LTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWN 204
L GH V L S D + + +G D L WN
Sbjct: 290 FVSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 326
>gb|AAL36231.1| putative Srw1 protein [Arabidopsis thaliana]
gi|20259635|gb|AAM14174.1| putative Srw1 protein
[Arabidopsis thaliana]
Length = 475
Score = 238 bits (607), Expect = 4e-62
Identities = 114/148 (77%), Positives = 123/148 (83%)
Frame = -2
Query: 572 LRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNHVDTGSQVCNLAWS 393
LR EH AAVKAIAWSPH LL SGGGTADRCIRFWNTT LN VDT SQVCNL WS
Sbjct: 328 LRFCEHAAAVKAIAWSPHHFGLLASGGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWS 387
Query: 392 KNVNEIVSTHGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLR 213
KNVNE+VSTHGYSQNQI+VWKYP++SK+ATLTGHS RVLYLA+SPDGQTIVTGAGDETLR
Sbjct: 388 KNVNELVSTHGYSQNQIIVWKYPTMSKLATLTGHSYRVLYLAVSPDGQTIVTGAGDETLR 447
Query: 212 FWNVFPSMKTPAPVKDTGLWSLGRTQIR 129
FWNVFPS K+ + + G S GRT IR
Sbjct: 448 FWNVFPSPKSQSRESEIGALSFGRTTIR 475
Score = 34.7 bits (78), Expect = 0.89
Identities = 29/122 (23%), Positives = 52/122 (41%), Gaps = 8/122 (6%)
Frame = -2
Query: 545 VKAIAWSPHQSNLLVSGGGTADRCIRFWN--------TTNGHQLNHVDTGSQVCNLAWSK 390
V ++ W+ ++L + GT+ ++ W+ T GH+L +V LAWS
Sbjct: 212 VCSVGWALRGTHLAI---GTSSGTVQIWDVLRCKNIRTMEGHRL-------RVGALAWSS 261
Query: 389 NVNEIVSTHGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRF 210
+V +S+ ++ + V+ L GH + L S D + + +G D L
Sbjct: 262 SV---LSSGSRDKSILQRDIRTQEDHVSKLKGHKSEICGLKWSSDNRELASGGNDNKLFV 318
Query: 209 WN 204
WN
Sbjct: 319 WN 320
>gb|AAD22612.1| cell cycle switch protein [Medicago sativa subsp. x varia]
Length = 475
Score = 236 bits (602), Expect = 2e-61
Identities = 112/148 (75%), Positives = 125/148 (83%)
Frame = -2
Query: 572 LRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNHVDTGSQVCNLAWS 393
L+ EHTAAVKAIAWSPH LL SGGGTADRCIRFWNTT L+ +DTGSQVCNL WS
Sbjct: 328 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWS 387
Query: 392 KNVNEIVSTHGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLR 213
KNVNE+VSTHGYSQNQI+VW+YP++SK+ATLTGH+ RVLYLA+SPDGQTIVTGAGDETLR
Sbjct: 388 KNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLR 447
Query: 212 FWNVFPSMKTPAPVKDTGLWSLGRTQIR 129
FWNVFPS K+ + G SLGRT IR
Sbjct: 448 FWNVFPSPKSQNTESEIGALSLGRTTIR 475
Score = 35.4 bits (80), Expect = 0.52
Identities = 28/115 (24%), Positives = 52/115 (44%), Gaps = 1/115 (0%)
Frame = -2
Query: 545 VKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNHVDTGS-QVCNLAWSKNVNEIVS 369
V ++ W+ ++L V GT + ++ W+ ++ ++ +V LAWS + ++S
Sbjct: 212 VCSVGWAQRGTHLAV---GTNNGKVQIWDAARCKKIRSMEGHRLRVGALAWSSS---LLS 265
Query: 368 THGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWN 204
+ G +N V+ L+GH V L S D + + +G D L WN
Sbjct: 266 SGGRDKNIYQRDIRTQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLFVWN 320
>gb|AAF37386.1|AF134835_1 WD-repeat cell cycle regulatory protein [Medicago truncatula]
Length = 475
Score = 236 bits (602), Expect = 2e-61
Identities = 112/148 (75%), Positives = 125/148 (83%)
Frame = -2
Query: 572 LRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNHVDTGSQVCNLAWS 393
L+ EHTAAVKAIAWSPH LL SGGGTADRCIRFWNTT L+ +DTGSQVCNL WS
Sbjct: 328 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWS 387
Query: 392 KNVNEIVSTHGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLR 213
KNVNE+VSTHGYSQNQI+VW+YP++SK+ATLTGH+ RVLYLA+SPDGQTIVTGAGDETLR
Sbjct: 388 KNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLR 447
Query: 212 FWNVFPSMKTPAPVKDTGLWSLGRTQIR 129
FWNVFPS K+ + G SLGRT IR
Sbjct: 448 FWNVFPSPKSQNTESEIGALSLGRTTIR 475
Score = 35.4 bits (80), Expect = 0.52
Identities = 28/115 (24%), Positives = 52/115 (44%), Gaps = 1/115 (0%)
Frame = -2
Query: 545 VKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNHVDTGS-QVCNLAWSKNVNEIVS 369
V ++ W+ ++L V GT + ++ W+ ++ ++ +V LAWS + ++S
Sbjct: 212 VCSVGWAQRGTHLAV---GTNNGKVQIWDAARCKKIRSMEGHRLRVGALAWSSS---LLS 265
Query: 368 THGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWN 204
+ G +N V+ L+GH V L S D + + +G D L WN
Sbjct: 266 SGGRDKNIYQRDIRTQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLFVWN 320
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,122,578
Number of Sequences: 1393205
Number of extensions: 12824798
Number of successful extensions: 39924
Number of sequences better than 10.0: 1789
Number of HSP's better than 10.0 without gapping: 33013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38510
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
