Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017339A_C01 KMC017339A_c01
(478 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_683478.1| similar to RRM-containing RNA-binding protein, ... 69 3e-11
pir||G96696 protein F1N21.14 [imported] - Arabidopsis thaliana g... 69 3e-11
dbj|BAC55625.1| OJ1081_B12.5 [Oryza sativa (japonica cultivar-gr... 65 3e-10
gb|AAL77203.1| p53 binding protein [Oryza sativa] 50 2e-05
sp|Q9R020|Z265_MOUSE Zinc finger protein 265 (Zinc finger, splic... 33 2.0
>ref|NP_683478.1| similar to RRM-containing RNA-binding protein, putative; protein
id: At1g67325.1 [Arabidopsis thaliana]
gi|26449540|dbj|BAC41896.1| unknown protein [Arabidopsis
thaliana] gi|28950845|gb|AAO63346.1| At1g67325
[Arabidopsis thaliana]
Length = 288
Score = 68.6 bits (166), Expect = 3e-11
Identities = 29/43 (67%), Positives = 35/43 (80%), Gaps = 1/43 (2%)
Frame = -3
Query: 476 KCEKCNNINYPFRTKCNRQNCGADKPAE-SEKSSSPSPDQNDQ 351
KC+ C NINYPFR+KCNRQNCGADKP + S S S +P++NDQ
Sbjct: 246 KCDNCGNINYPFRSKCNRQNCGADKPGDRSNGSPSRAPEENDQ 288
Score = 48.5 bits (114), Expect = 4e-05
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = -3
Query: 473 CEKCNNINYPFRTKCNRQNCGADKPAESEKSSSPSPDQNDQ 351
C C N+N+ FRT CN +NC +PA+ S+P P Q+ Q
Sbjct: 28 CPSCGNVNFSFRTTCNMRNCTQPRPADHNGKSAPKPMQHQQ 68
Score = 39.7 bits (91), Expect = 0.017
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 473 CEKCNNINYPFRTKCNRQNCGADKPAESEKSSS 375
C C N+N+ FRT CN + C KP + SS
Sbjct: 200 CPNCGNVNFSFRTVCNMRKCNTPKPGSQQGGSS 232
>pir||G96696 protein F1N21.14 [imported] - Arabidopsis thaliana
gi|9828626|gb|AAG00249.1|AC002130_14 F1N21.14
[Arabidopsis thaliana]
Length = 765
Score = 68.6 bits (166), Expect = 3e-11
Identities = 29/43 (67%), Positives = 35/43 (80%), Gaps = 1/43 (2%)
Frame = -3
Query: 476 KCEKCNNINYPFRTKCNRQNCGADKPAE-SEKSSSPSPDQNDQ 351
KC+ C NINYPFR+KCNRQNCGADKP + S S S +P++NDQ
Sbjct: 202 KCDNCGNINYPFRSKCNRQNCGADKPGDRSNGSPSRAPEENDQ 244
Score = 40.4 bits (93), Expect = 0.010
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 473 CEKCNNINYPFRTKCNRQNCGADKPAESEKSSSPSPDQN 357
C C N+N+ FRT CN + C KP SS QN
Sbjct: 157 CPNCGNVNFSFRTVCNMRKCNTPKPGSQGGSSDKISKQN 195
>dbj|BAC55625.1| OJ1081_B12.5 [Oryza sativa (japonica cultivar-group)]
Length = 361
Score = 65.5 bits (158), Expect = 3e-10
Identities = 26/42 (61%), Positives = 34/42 (80%)
Frame = -3
Query: 476 KCEKCNNINYPFRTKCNRQNCGADKPAESEKSSSPSPDQNDQ 351
KCEKCNNINYPFRTKCNR +C A+KP ++ ++ S DQ++Q
Sbjct: 288 KCEKCNNINYPFRTKCNRPSCEAEKPFQTNNANESSADQDNQ 329
Score = 40.0 bits (92), Expect = 0.013
Identities = 14/26 (53%), Positives = 17/26 (64%)
Frame = -3
Query: 476 KCEKCNNINYPFRTKCNRQNCGADKP 399
KC CNNIN+ FRT CN + C +P
Sbjct: 240 KCPNCNNINFAFRTVCNMRKCNTPRP 265
Score = 39.7 bits (91), Expect = 0.017
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -3
Query: 473 CEKCNNINYPFRTKCNRQNCGADKPAESEK 384
C C N+N+ FRT CN +NC +P + K
Sbjct: 69 CPSCQNVNFAFRTTCNMRNCNQSRPTDYTK 98
>gb|AAL77203.1| p53 binding protein [Oryza sativa]
Length = 98
Score = 49.7 bits (117), Expect = 2e-05
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = -3
Query: 473 CEKCNNINYPFRTKCNRQNCGADKPA 396
C +CNN+NYPFRT CNR+ CG+ +PA
Sbjct: 68 CPECNNLNYPFRTACNRKGCGSSRPA 93
Score = 41.6 bits (96), Expect = 0.004
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 473 CEKCNNINYPFRTKCNRQNCGADKPAESEKSSSPSPDQN 357
C KC N+N+ FR CN + CGA +P+ ++ D++
Sbjct: 22 CPKCENVNFSFRNSCNMKKCGAPRPSPGSNATPCRKDKD 60
>sp|Q9R020|Z265_MOUSE Zinc finger protein 265 (Zinc finger, splicing)
gi|6164630|gb|AAF04474.1| ZFP265 [Mus musculus]
Length = 326
Score = 32.7 bits (73), Expect = 2.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 470 EKCNNINYPFRTKCNRQNCGADKPAESE 387
+KC N+N+ RT CNR CG +K E++
Sbjct: 18 KKCGNVNFARRTSCNR--CGREKTTEAK 43
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,479,306
Number of Sequences: 1393205
Number of extensions: 7428550
Number of successful extensions: 19085
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 18331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19069
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
