Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017336A_C01 KMC017336A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC43291.1| putative linker histone H1 variant protein [Beta... 28 0.63
gb|AAL12480.1| outer membrane protein U [Vibrio fischeri] 33 1.7
ref|NP_178295.1| hypothetical protein; protein id: At2g01860.1 [... 32 3.9
pir||T07035 histone H1, stress-inducible - tomato gi|825521|emb|... 27 4.8
gb|AAF64525.1|AF253416_1 histone H1 variant [Lycopersicon chilense] 27 4.8
>emb|CAC43291.1| putative linker histone H1 variant protein [Beta vulgaris]
Length = 202
Score = 28.5 bits (62), Expect(2) = 0.63
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 309 IAQFMEDKHKMMLLGNFKNI 250
IA+FME KHK +L NF+ I
Sbjct: 80 IAKFMEQKHKTVLPSNFRKI 99
Score = 25.4 bits (54), Expect(2) = 0.63
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = -2
Query: 232 LKNQTMRRKLVKIKTLHQLS*IHNNRDE 149
LKN R KL+K+K ++LS R E
Sbjct: 104 LKNSVSRGKLIKVKASYKLSEAGKKRSE 131
>gb|AAL12480.1| outer membrane protein U [Vibrio fischeri]
Length = 321
Score = 33.5 bits (75), Expect = 1.7
Identities = 12/43 (27%), Positives = 27/43 (61%)
Frame = +1
Query: 103 LGCFFYVSALVIGSILRLYYCGFKIAGAKSLSSRVFSS*FDSS 231
+G F++ G ++ L Y GF++AGA ++ VF++ ++++
Sbjct: 213 MGDFYFAGTFTTGEVVDLDYTGFEVAGAYTMGKTVFTATYNNA 255
>ref|NP_178295.1| hypothetical protein; protein id: At2g01860.1 [Arabidopsis
thaliana] gi|25410939|pir||A84430 hypothetical protein
At2g01860 [imported] - Arabidopsis thaliana
gi|4522011|gb|AAD21784.1| hypothetical protein
[Arabidopsis thaliana]
Length = 190
Score = 32.3 bits (72), Expect = 3.9
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 244 ILDILEIPQKHHLMLILHELGYSRKAFSLSNLESTSILDLCM 369
IL+I + P K+HL++ L E R+ LS + TSI+ +C+
Sbjct: 2 ILEIAKNPDKYHLVVALLEELKKREDLKLSQQDCTSIMKICV 43
>pir||T07035 histone H1, stress-inducible - tomato gi|825521|emb|CAA77867.1| H1
histone-like protein [Lycopersicon esculentum]
Length = 207
Score = 27.3 bits (59), Expect(2) = 4.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 309 IAQFMEDKHKMMLLGNFKNI 250
+A++MEDKHK L NF+ I
Sbjct: 79 VAKYMEDKHKDELPANFRKI 98
Score = 23.5 bits (49), Expect(2) = 4.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 232 LKNQTMRRKLVKIKTLHQLS 173
LKN + KL+KIK ++LS
Sbjct: 103 LKNSAAKGKLIKIKASYKLS 122
>gb|AAF64525.1|AF253416_1 histone H1 variant [Lycopersicon chilense]
Length = 202
Score = 27.3 bits (59), Expect(2) = 4.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 309 IAQFMEDKHKMMLLGNFKNI 250
+A++MEDKHK L NF+ I
Sbjct: 74 VAKYMEDKHKDELPANFRKI 93
Score = 23.5 bits (49), Expect(2) = 4.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 232 LKNQTMRRKLVKIKTLHQLS 173
LKN + KL+KIK ++LS
Sbjct: 98 LKNSAAKGKLIKIKASYKLS 117
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,675,719
Number of Sequences: 1393205
Number of extensions: 8665545
Number of successful extensions: 16710
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 16301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16704
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
