Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017335A_C01 KMC017335A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567778.1| putative protein; protein id: At4g27585.1, supp... 76 3e-13
pir||T05863 hypothetical protein T29A15.70 - Arabidopsis thalian... 73 3e-12
gb|AAM63205.1| stomatin-like protein [Arabidopsis thaliana] 60 2e-08
ref|NP_200221.1| putative protein; protein id: At5g54100.1, supp... 60 2e-08
gb|AAF68388.1|AF236372_1 stomatin-like protein [Zea mays] 57 1e-07
>ref|NP_567778.1| putative protein; protein id: At4g27585.1, supported by cDNA:
20829., supported by cDNA: gi_14334465, supported by
cDNA: gi_16323441 [Arabidopsis thaliana]
gi|14334466|gb|AAK59431.1| unknown protein [Arabidopsis
thaliana] gi|16323442|gb|AAL15215.1| unknown protein
[Arabidopsis thaliana] gi|21554181|gb|AAM63260.1|
stomatin-like protein [Arabidopsis thaliana]
Length = 411
Score = 75.9 bits (185), Expect = 3e-13
Identities = 46/98 (46%), Positives = 60/98 (60%), Gaps = 5/98 (5%)
Frame = -2
Query: 575 YIQAFSNIAKQGTTMLLPSSASNPANMMAQALTMYKSLIGNVNDKHSGNTHSSIASQEEE 396
YI AF NIAK+GT MLLPS ASNPA+M+AQALTMYKSL+ N K T + + EE
Sbjct: 307 YITAFGNIAKEGTIMLLPSGASNPASMIAQALTMYKSLVINGPSKDHQETQALDETDLEE 366
Query: 395 NDSSGE--VKDENSTRA---SITNRIPDYSGTNGFSLQ 297
+ GE + + ++ R+ S P ++G FSLQ
Sbjct: 367 LEDMGEKHISEGSNNRSGSISFDTEKPGHTGEPRFSLQ 404
>pir||T05863 hypothetical protein T29A15.70 - Arabidopsis thaliana
gi|4469009|emb|CAB38270.1| putative protein [Arabidopsis
thaliana] gi|7269612|emb|CAB81408.1| putative protein
[Arabidopsis thaliana]
Length = 515
Score = 72.8 bits (177), Expect = 3e-12
Identities = 46/105 (43%), Positives = 58/105 (54%)
Frame = -2
Query: 575 YIQAFSNIAKQGTTMLLPSSASNPANMMAQALTMYKSLIGNVNDKHSGNTHSSIASQEEE 396
YI AF NIAK+GT MLLPS ASNPA+M+AQALTMYKSL+ N K T + + EE
Sbjct: 307 YITAFGNIAKEGTIMLLPSGASNPASMIAQALTMYKSLVINGPSKDHQETQALDETDLEE 366
Query: 395 NDSSGEVKDENSTRASITNRIPDYSGTNGFSLQKPPTRD*SLILQ 261
+ GE I+ + SG+ F +KP S + Q
Sbjct: 367 LEDMGE--------KHISEGSNNRSGSISFDTEKPALPIVSFVFQ 403
>gb|AAM63205.1| stomatin-like protein [Arabidopsis thaliana]
Length = 401
Score = 60.1 bits (144), Expect = 2e-08
Identities = 31/48 (64%), Positives = 35/48 (72%)
Frame = -2
Query: 575 YIQAFSNIAKQGTTMLLPSSASNPANMMAQALTMYKSLIGNVNDKHSG 432
YIQAF IAK+GTTMLLPS+ NPA+M+AQAL MYK L V SG
Sbjct: 350 YIQAFGKIAKEGTTMLLPSNVDNPASMIAQALGMYKGLSTKVPTVVSG 397
>ref|NP_200221.1| putative protein; protein id: At5g54100.1, supported by cDNA:
205622. [Arabidopsis thaliana]
gi|8809581|dbj|BAA97132.1| contains similarity to
stomatin like protein~gene_id:MJP23.8 [Arabidopsis
thaliana] gi|26452347|dbj|BAC43259.1| unknown protein
[Arabidopsis thaliana] gi|28950967|gb|AAO63407.1|
At5g54100 [Arabidopsis thaliana]
Length = 401
Score = 60.1 bits (144), Expect = 2e-08
Identities = 31/48 (64%), Positives = 35/48 (72%)
Frame = -2
Query: 575 YIQAFSNIAKQGTTMLLPSSASNPANMMAQALTMYKSLIGNVNDKHSG 432
YIQAF IAK+GTTMLLPS+ NPA+M+AQAL MYK L V SG
Sbjct: 350 YIQAFGKIAKEGTTMLLPSNVDNPASMIAQALGMYKGLSTKVPTVVSG 397
>gb|AAF68388.1|AF236372_1 stomatin-like protein [Zea mays]
Length = 394
Score = 57.4 bits (137), Expect = 1e-07
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Frame = -2
Query: 575 YIQAFSNIAKQGTTMLLPSSASNPANMMAQALTMYKSLIGNVNDKHSGNTHSSIASQEEE 396
YI+AFSN+A++ TMLLP +++PA+ +AQA+ Y+ + HS + Q EE
Sbjct: 302 YIEAFSNLAQKTNTMLLPGDSASPASFVAQAMKTYEQI-------HSHSQALKSHPQIEE 354
Query: 395 NDSSGEVKDENSTRASITNRIPDYSGTN-GFSLQKPPTR 282
SGE S+ AS T + + + +N FSLQ+P +
Sbjct: 355 LKESGETSPAPSSEASKTPPLIEEADSNQTFSLQRPKNK 393
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,881,247
Number of Sequences: 1393205
Number of extensions: 8188760
Number of successful extensions: 23454
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 21902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23396
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
