Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017333A_C01 KMC017333A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD56219.1| ribosomal protein S3a [Cicer arietinum] 280 8e-75
dbj|BAA05057.1| This gene is specifically expressed at the S pha... 273 7e-73
sp|P33444|RS3A_CATRO 40S RIBOSOMAL PROTEIN S3A (CYC07 PROTEIN) 271 2e-72
pir||JQ0939 ribosomal protein S3a - Madagascar periwinkle gi|217... 271 2e-72
dbj|BAA89498.1| cyc07 [Daucus carota] 268 2e-71
>emb|CAD56219.1| ribosomal protein S3a [Cicer arietinum]
Length = 261
Score = 280 bits (715), Expect = 8e-75
Identities = 137/143 (95%), Positives = 141/143 (97%)
Frame = +3
Query: 63 MAVGKNKRISKGKKGSKKKAADPFAKKDWYDIKAPSLFQVKNVGKTLVSRTQGTKIASEG 242
MAVGKNKRISKGKKG KKKAADPF+KKDWYDIKAPS+FQVKNVGKTLVSRTQGTKIASEG
Sbjct: 1 MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60
Query: 243 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 422
LKHRVFE+SLADLQGDEDNAFRKIRLRAEDVQGKNVLTNF+GMDFTTDKLRSLVRKWQTL
Sbjct: 61 LKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTL 120
Query: 423 IEAHVDVKTTDNYTLRMFCIAFT 491
IEAHVDVKTTDNYTLRMFCI FT
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFT 143
>dbj|BAA05057.1| This gene is specifically expressed at the S phase during the cell
cycle in the synchronous culture of periwinkle cells.
[Catharanthus roseus]
Length = 245
Score = 273 bits (698), Expect = 7e-73
Identities = 131/143 (91%), Positives = 140/143 (97%)
Frame = +3
Query: 63 MAVGKNKRISKGKKGSKKKAADPFAKKDWYDIKAPSLFQVKNVGKTLVSRTQGTKIASEG 242
MAVGKNKRISKGKKG KKKAADPFAKKDWYDIKAPS+F V+NVGKTLV+RTQGTKIASEG
Sbjct: 1 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEG 60
Query: 243 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 422
LKHRVFE+SLADLQGDED++FRKIRLRAED+QGKNVLTNFWGMDFTTDKLRSLVRKWQ+L
Sbjct: 61 LKHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSL 120
Query: 423 IEAHVDVKTTDNYTLRMFCIAFT 491
IEAHVDVKTTD+YTLRMFCI FT
Sbjct: 121 IEAHVDVKTTDSYTLRMFCIGFT 143
>sp|P33444|RS3A_CATRO 40S RIBOSOMAL PROTEIN S3A (CYC07 PROTEIN)
Length = 260
Score = 271 bits (694), Expect = 2e-72
Identities = 130/143 (90%), Positives = 140/143 (96%)
Frame = +3
Query: 63 MAVGKNKRISKGKKGSKKKAADPFAKKDWYDIKAPSLFQVKNVGKTLVSRTQGTKIASEG 242
MAVGKNKRISKGKKG KKKAADPFAKKDWYDIKAPS+F V+NVGKTLV+RTQGTKIASEG
Sbjct: 1 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEG 60
Query: 243 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 422
L+HRVFE+SLADLQGDED++FRKIRLRAED+QGKNVLTNFWGMDFTTDKLRSLVRKWQ+L
Sbjct: 61 LEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSL 120
Query: 423 IEAHVDVKTTDNYTLRMFCIAFT 491
IEAHVDVKTTD+YTLRMFCI FT
Sbjct: 121 IEAHVDVKTTDSYTLRMFCIGFT 143
>pir||JQ0939 ribosomal protein S3a - Madagascar periwinkle
gi|217903|dbj|BAA00860.1| ORF [Catharanthus roseus]
Length = 245
Score = 271 bits (694), Expect = 2e-72
Identities = 130/143 (90%), Positives = 140/143 (96%)
Frame = +3
Query: 63 MAVGKNKRISKGKKGSKKKAADPFAKKDWYDIKAPSLFQVKNVGKTLVSRTQGTKIASEG 242
MAVGKNKRISKGKKG KKKAADPFAKKDWYDIKAPS+F V+NVGKTLV+RTQGTKIASEG
Sbjct: 1 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEG 60
Query: 243 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 422
L+HRVFE+SLADLQGDED++FRKIRLRAED+QGKNVLTNFWGMDFTTDKLRSLVRKWQ+L
Sbjct: 61 LEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSL 120
Query: 423 IEAHVDVKTTDNYTLRMFCIAFT 491
IEAHVDVKTTD+YTLRMFCI FT
Sbjct: 121 IEAHVDVKTTDSYTLRMFCIGFT 143
>dbj|BAA89498.1| cyc07 [Daucus carota]
Length = 261
Score = 268 bits (686), Expect = 2e-71
Identities = 132/143 (92%), Positives = 137/143 (95%)
Frame = +3
Query: 63 MAVGKNKRISKGKKGSKKKAADPFAKKDWYDIKAPSLFQVKNVGKTLVSRTQGTKIASEG 242
MAVGKNKRISKGKKG KKKA DPFAKKDWYDIKAP++FQ KNVGKTLVSRTQGTKIASEG
Sbjct: 1 MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEG 60
Query: 243 LKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL 422
LKHRVFEV LADLQGDED A+RKIRLRAEDVQGKNVLTNF+GMDFTTDKLRSLVRKWQTL
Sbjct: 61 LKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTL 120
Query: 423 IEAHVDVKTTDNYTLRMFCIAFT 491
IEAHVDVKTTD+YTLRMFCI FT
Sbjct: 121 IEAHVDVKTTDSYTLRMFCIGFT 143
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,741,899
Number of Sequences: 1393205
Number of extensions: 10720338
Number of successful extensions: 90286
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 51982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76515
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
