Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017332A_C01 KMC017332A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM21317.1|AF373100_1 auxin-regulated protein [Populus tremul... 147 1e-34
emb|CAC84711.1| aux/IAA protein [Populus tremula x Populus tremu... 137 1e-31
ref|NP_187124.1| auxin-induced protein; protein id: At3g04730.1,... 132 3e-30
gb|AAD32146.1|AF123508_1 Nt-iaa28 deduced protein [Nicotiana tab... 120 1e-26
sp|P13089|AX28_SOYBN AUXIN-INDUCED PROTEIN AUX28 gi|81759|pir||A... 116 2e-25
>gb|AAM21317.1|AF373100_1 auxin-regulated protein [Populus tremula x Populus tremuloides]
Length = 249
Score = 147 bits (370), Expect = 1e-34
Identities = 89/165 (53%), Positives = 108/165 (64%), Gaps = 2/165 (1%)
Frame = +2
Query: 83 MTSVVVDAERDKYSMINFEETELRLGIPGAGESGIKIGGG-SGGKRGFSETDANVDLKLN 259
MTS++ YSM+NFEETELRLG+PG +G S GKRGFSET VDLKLN
Sbjct: 1 MTSIMGAEPAGTYSMMNFEETELRLGLPGGVSNGNDSEAAKSNGKRGFSET---VDLKLN 57
Query: 260 LSS-DLGSASSSVSSTLPPNKGKEKTAATTQANDPAKPPAKAQVVGWPPVRSFRKNIVNV 436
LS+ + G S + KEKT A + NDPAKPP+KAQVVGWPP+RSFRKN++ V
Sbjct: 58 LSTKETGKDGSDQEKVVM----KEKTVAP-RPNDPAKPPSKAQVVGWPPIRSFRKNVMAV 112
Query: 437 QKSNNNEGAEKKVTTTTATTTAGNSAAAAAFVKVSMDGAPYLRKV 571
QK++N+EG + + + A AAFVKVSMDGAPYLRKV
Sbjct: 113 QKNSNDEGEK----------ASSSGATGAAFVKVSMDGAPYLRKV 147
>emb|CAC84711.1| aux/IAA protein [Populus tremula x Populus tremuloides]
Length = 229
Score = 137 bits (345), Expect = 1e-31
Identities = 85/155 (54%), Positives = 98/155 (62%)
Frame = +2
Query: 107 ERDKYSMINFEETELRLGIPGAGESGIKIGGGSGGKRGFSETDANVDLKLNLSSDLGSAS 286
E +K + + FEETELRLG+PG G G + GG KRGFSET VDLKLNLSS G
Sbjct: 2 EVEKGTKMRFEETELRLGLPGNGGGGTE-GGEFARKRGFSET---VDLKLNLSSKEGG-- 55
Query: 287 SSVSSTLPPNKGKEKTAATTQANDPAKPPAKAQVVGWPPVRSFRKNIVNVQKSNNNEGAE 466
+ PN K + A DPAKPPAKAQVVGWPPVRSFRKN++ VQKS+ ++ +
Sbjct: 56 ------IDPNHEKTRREKNLLATDPAKPPAKAQVVGWPPVRSFRKNMLAVQKSSTDQEST 109
Query: 467 KKVTTTTATTTAGNSAAAAAFVKVSMDGAPYLRKV 571
KV GN A FVKVSMDGAPYLRKV
Sbjct: 110 NKV-------PGGN----ATFVKVSMDGAPYLRKV 133
>ref|NP_187124.1| auxin-induced protein; protein id: At3g04730.1, supported by cDNA:
32727., supported by cDNA: gi_12083209, supported by
cDNA: gi_14030658, supported by cDNA: gi_2618720
[Arabidopsis thaliana] gi|11131089|sp|O24407|AXIG_ARATH
Auxin-responsive protein IAA16 (Indoleacetic
acid-induced protein 16) gi|2618721|gb|AAB84353.1| IAA16
[Arabidopsis thaliana]
gi|6175173|gb|AAF04899.1|AC011437_14 auxin-induced
protein [Arabidopsis thaliana]
gi|12083210|gb|AAG48764.1|AF332400_1 putative
auxin-induced protein IAA16 [Arabidopsis thaliana]
gi|14030659|gb|AAK53004.1|AF375420_1 AT3g04730/F7O18_22
[Arabidopsis thaliana] gi|21592802|gb|AAM64751.1|
auxin-induced protein [Arabidopsis thaliana]
gi|23507781|gb|AAN38694.1| At3g04730/F7O18_22
[Arabidopsis thaliana]
Length = 236
Score = 132 bits (332), Expect = 3e-30
Identities = 81/151 (53%), Positives = 99/151 (64%), Gaps = 2/151 (1%)
Frame = +2
Query: 125 MINFEETELRLGIPGAGESGIKIGGGSGGKRGFSETDANVDLKLNLSSDLGSASSSVSST 304
MINFE TELRLG+PG G G ++ G + GKRGFSET VDLKLNLSS +A SVS
Sbjct: 1 MINFEATELRLGLPG-GNHGGEMAGKNNGKRGFSET---VDLKLNLSS---TAMDSVSKV 53
Query: 305 LPPNKGKEKTAATTQANDPAKPPAKAQVVGWPPVRSFRKNIVNVQKSNNNEGAE--KKVT 478
N KEK KPPAKAQVVGWPPVRSFRKN+++ QK + E K +
Sbjct: 54 DLENM-KEKVV---------KPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTS 103
Query: 479 TTTATTTAGNSAAAAAFVKVSMDGAPYLRKV 571
++ T++ ++ A A+VKVSMDGAPYLRK+
Sbjct: 104 GSSGATSSASACATVAYVKVSMDGAPYLRKI 134
>gb|AAD32146.1|AF123508_1 Nt-iaa28 deduced protein [Nicotiana tabacum]
Length = 240
Score = 120 bits (301), Expect = 1e-26
Identities = 84/165 (50%), Positives = 100/165 (59%), Gaps = 2/165 (1%)
Frame = +2
Query: 83 MTSVVVDAERDKYSMINFEETELRLGIPGA--GESGIKIGGGSGGKRGFSETDANVDLKL 256
MTSV+ AE DK + ETELRLG+ A G G ++ + GKR FSET VDLKL
Sbjct: 1 MTSVM-GAECDKIQLDYEAETELRLGLRSAINGNEG-EMTSKNNGKRVFSET---VDLKL 55
Query: 257 NLSSDLGSASSSVSSTLPPNKGKEKTAATTQANDPAKPPAKAQVVGWPPVRSFRKNIVNV 436
NLSS S+V + + K K+ A T DPAKPPAKAQVVGWPPVRSFRKN++ V
Sbjct: 56 NLSSK----DSTVDNQVDNIKEKKNIAPT----DPAKPPAKAQVVGWPPVRSFRKNVLTV 107
Query: 437 QKSNNNEGAEKKVTTTTATTTAGNSAAAAAFVKVSMDGAPYLRKV 571
QK++ G +S AAFVKVS+DGAPYLRKV
Sbjct: 108 QKNSTGNGE--------------SSGGGAAFVKVSVDGAPYLRKV 138
>sp|P13089|AX28_SOYBN AUXIN-INDUCED PROTEIN AUX28 gi|81759|pir||A28993 auxin-induced
protein aux28 - soybean gi|169921|gb|AAA33945.1|
auxin-regulated protein (Aux28)
Length = 243
Score = 116 bits (291), Expect = 2e-25
Identities = 80/161 (49%), Positives = 96/161 (58%), Gaps = 13/161 (8%)
Frame = +2
Query: 128 INFEETELRLGIPG-AGESGIKIGGGSGGKRGFSETDAN--------VDLKLNLSSDLGS 280
+ FEETELRLG+PG G + I KRGFSET+ VDL LNLSS +
Sbjct: 1 MGFEETELRLGLPGNGGTEEVLIR-----KRGFSETETGHEDESATTVDLMLNLSSK-EA 54
Query: 281 ASSSVSSTLPPNKGK----EKTAATTQANDPAKPPAKAQVVGWPPVRSFRKNIVNVQKSN 448
A+++ ++ P +K K EKT DPAKPPAK QVVGWPPVRSFRKN++ VQKS
Sbjct: 55 ATTAAAAADPTDKHKTLPKEKTLLPA---DPAKPPAKTQVVGWPPVRSFRKNMLAVQKSV 111
Query: 449 NNEGAEKKVTTTTATTTAGNSAAAAAFVKVSMDGAPYLRKV 571
E + NS+ A+FVKVSMDGAPYLRKV
Sbjct: 112 GEESEK-------------NSSPNASFVKVSMDGAPYLRKV 139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,101,628
Number of Sequences: 1393205
Number of extensions: 13319717
Number of successful extensions: 161748
Number of sequences better than 10.0: 788
Number of HSP's better than 10.0 without gapping: 86138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143023
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
