Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017310A_C01 KMC017310A_c01
(666 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB84393.1| P0529E05.9 [Oryza sativa (japonica cultivar-group)] 44 0.002
gb|AAN05567.1| putative far-red impaired response protein [Oryza... 44 0.002
gb|AAL86472.1|AC077693_11 putative transposase [Oryza sativa (ja... 40 0.028
gb|AAM19033.1|AC084748_23 putative transposase [Oryza sativa (ja... 39 0.048
dbj|BAB39118.1| P0686E09.10 [Oryza sativa (japonica cultivar-gro... 38 0.14
>dbj|BAB84393.1| P0529E05.9 [Oryza sativa (japonica cultivar-group)]
Length = 773
Score = 43.9 bits (102), Expect = 0.002
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = -3
Query: 664 RMIMDYEYFGDVVSLDTTYSTNNAYRPLAV 575
R ++D++YFGDV+ DTTY TNN RP A+
Sbjct: 362 RSVLDFDYFGDVICFDTTYRTNNYGRPFAL 391
>gb|AAN05567.1| putative far-red impaired response protein [Oryza sativa (japonica
cultivar-group)]
Length = 535
Score = 43.9 bits (102), Expect = 0.002
Identities = 19/34 (55%), Positives = 23/34 (66%)
Frame = -3
Query: 664 RMIMDYEYFGDVVSLDTTYSTNNAYRPLAVSMCF 563
+M+ DY YFGDVVS DTT+ TN RP V + F
Sbjct: 137 KMLTDYAYFGDVVSFDTTFGTNKESRPFGVFVGF 170
>gb|AAL86472.1|AC077693_11 putative transposase [Oryza sativa (japonica cultivar-group)]
Length = 486
Score = 40.0 bits (92), Expect = 0.028
Identities = 18/34 (52%), Positives = 22/34 (63%)
Frame = -3
Query: 664 RMIMDYEYFGDVVSLDTTYSTNNAYRPLAVSMCF 563
+M+ DY YFGDVVS DTT+ TN R V + F
Sbjct: 269 KMLTDYAYFGDVVSFDTTFGTNKESRLFGVFVGF 302
>gb|AAM19033.1|AC084748_23 putative transposase [Oryza sativa (japonica cultivar-group)]
Length = 1203
Score = 39.3 bits (90), Expect = 0.048
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = -3
Query: 664 RMIMDYEYFGDVVSLDTTYSTNNAYRPL 581
+ I+DY YFGDV+ +DT YST++ RPL
Sbjct: 603 KSILDYHYFGDVLCVDTRYSTSDHSRPL 630
>dbj|BAB39118.1| P0686E09.10 [Oryza sativa (japonica cultivar-group)]
Length = 1066
Score = 37.7 bits (86), Expect = 0.14
Identities = 16/23 (69%), Positives = 18/23 (77%)
Frame = -3
Query: 664 RMIMDYEYFGDVVSLDTTYSTNN 596
+MI DY FGDVVS DTT+ TNN
Sbjct: 211 KMIADYARFGDVVSFDTTFGTNN 233
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,725,576
Number of Sequences: 1393205
Number of extensions: 9727932
Number of successful extensions: 35981
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 34076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35835
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
