Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017301A_C01 KMC017301A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564165.1| protein phosphatase 2C (PP2C), putative; protei... 205 3e-52
gb|AAM61437.1| protein phosphatase type 2C, putative [Arabidopsi... 199 2e-50
ref|NP_174731.1| protein phosphatase 2C (PP2C); protein id: At1g... 190 9e-48
emb|CAD40849.1| OSJNBa0086B14.21 [Oryza sativa (japonica cultiva... 177 6e-44
ref|NP_565172.1| protein phosphatase 2C (PP2C); protein id: At1g... 164 7e-40
>ref|NP_564165.1| protein phosphatase 2C (PP2C), putative; protein id: At1g22280.1,
supported by cDNA: 119977., supported by cDNA:
gi_19347849 [Arabidopsis thaliana]
gi|25518108|pir||F86355 T16E15.10 protein - Arabidopsis
thaliana gi|9392686|gb|AAF87263.1|AC068562_10 Strong
similarity to protein phosphatase type 2C (PP2C2) from
Lotus japonicus gb|AF092432 and contains a protein
phosphatase 2C PF|00481 domain. EST gb|T46258 comes
from this gene. [Arabidopsis thaliana]
gi|19347850|gb|AAL86005.1| putative protein phosphatase
type 2C [Arabidopsis thaliana]
gi|22136704|gb|AAM91671.1| putative protein phosphatase
type 2C [Arabidopsis thaliana]
Length = 281
Score = 205 bits (521), Expect = 3e-52
Identities = 98/135 (72%), Positives = 112/135 (82%)
Frame = -2
Query: 405 MDSLCCFSSVSQVVGGRSSSNSGKGKSSQSPVKYGFSLVKGKANHPMEDFHVAKFVEFKG 226
M CCF+S S+VVGG+SSS SGKG+S + +KYGFSLVKGKANHPMED+HVA F+ +
Sbjct: 1 MGKFCCFTSASEVVGGQSSSRSGKGRSDEGMIKYGFSLVKGKANHPMEDYHVANFINIQD 60
Query: 225 QELGLFAIYDGHLGDTVPAYLQKHLFPNILKEEDFWNDPFMSICKAYLSTDEAILSHSPD 46
ELGLFAIYDGH+GD+VPAYLQK LF NILKE +FW DP SI KAY TD+AILS+S D
Sbjct: 61 HELGLFAIYDGHMGDSVPAYLQKRLFSNILKEGEFWVDPRRSIAKAYEKTDQAILSNSSD 120
Query: 45 LGRGGSTAVTAILIN 1
LGRGGSTAVTAILIN
Sbjct: 121 LGRGGSTAVTAILIN 135
>gb|AAM61437.1| protein phosphatase type 2C, putative [Arabidopsis thaliana]
Length = 280
Score = 199 bits (506), Expect = 2e-50
Identities = 98/135 (72%), Positives = 111/135 (81%)
Frame = -2
Query: 405 MDSLCCFSSVSQVVGGRSSSNSGKGKSSQSPVKYGFSLVKGKANHPMEDFHVAKFVEFKG 226
M CCF+S S+VVGG+SSS SGKG+S + +KYGFSLVKGKANHPMED+HVA F+ +
Sbjct: 1 MGKFCCFTSASEVVGGQSSSRSGKGRSDEGMIKYGFSLVKGKANHPMEDYHVANFINIQD 60
Query: 225 QELGLFAIYDGHLGDTVPAYLQKHLFPNILKEEDFWNDPFMSICKAYLSTDEAILSHSPD 46
ELGLFAIYDGH+GD+VPAYLQK LF NILKE +FW DP SI KAY T EAILS+S D
Sbjct: 61 HELGLFAIYDGHMGDSVPAYLQKRLFSNILKEGEFWVDPRRSIAKAYEKT-EAILSNSSD 119
Query: 45 LGRGGSTAVTAILIN 1
LGRGGSTAVTAILIN
Sbjct: 120 LGRGGSTAVTAILIN 134
>ref|NP_174731.1| protein phosphatase 2C (PP2C); protein id: At1g34750.1, supported
by cDNA: gi_13877698 [Arabidopsis thaliana]
gi|5668780|gb|AAD46006.1|AC007894_4 Strong similarity to
gb|AF092432 protein phosphatase type 2C from Lotus
japonicus. EST gb|T76026 comes from this gene.
[Arabidopsis thaliana]
gi|13877699|gb|AAK43927.1|AF370608_1 protein phosphatase
type 2C-like protein [Arabidopsis thaliana]
Length = 282
Score = 190 bits (483), Expect = 9e-48
Identities = 95/136 (69%), Positives = 111/136 (80%), Gaps = 1/136 (0%)
Frame = -2
Query: 405 MDSLCCF-SSVSQVVGGRSSSNSGKGKSSQSPVKYGFSLVKGKANHPMEDFHVAKFVEFK 229
M LCCF SS +V GR+S++SGKG+++ +K+G+SLVKGKANHPMED+HV+KFV+
Sbjct: 1 MAKLCCFGSSDYDLVVGRASTSSGKGRNNDGEIKFGYSLVKGKANHPMEDYHVSKFVKID 60
Query: 228 GQELGLFAIYDGHLGDTVPAYLQKHLFPNILKEEDFWNDPFMSICKAYLSTDEAILSHSP 49
G ELGLFAIYDGHLG+ VPAYLQKHLF NILKEE F DP SI AY TD+AILSHS
Sbjct: 61 GNELGLFAIYDGHLGERVPAYLQKHLFSNILKEEQFRYDPQRSIIAAYEKTDQAILSHSS 120
Query: 48 DLGRGGSTAVTAILIN 1
DLGRGGSTAVTAIL+N
Sbjct: 121 DLGRGGSTAVTAILMN 136
>emb|CAD40849.1| OSJNBa0086B14.21 [Oryza sativa (japonica cultivar-group)]
Length = 284
Score = 177 bits (450), Expect = 6e-44
Identities = 88/137 (64%), Positives = 103/137 (74%), Gaps = 2/137 (1%)
Frame = -2
Query: 405 MDSLCCFSSVSQVVGGRSSSNSGKGKSSQSPVK--YGFSLVKGKANHPMEDFHVAKFVEF 232
M CCF + G +S++SGKGK Q VK YGF LV+G NHPMED+HVA+ E
Sbjct: 1 MSRFCCFGAGCSEFSGHASTSSGKGKGIQGQVKVSYGFYLVRGMTNHPMEDYHVAELAEE 60
Query: 231 KGQELGLFAIYDGHLGDTVPAYLQKHLFPNILKEEDFWNDPFMSICKAYLSTDEAILSHS 52
KG ELGLFAI+DGHLGDTVPAYLQK+LF NIL EE+F P +I KAY TD+AILSH+
Sbjct: 61 KGNELGLFAIFDGHLGDTVPAYLQKNLFANILNEEEFLTQPDRAIIKAYEKTDQAILSHT 120
Query: 51 PDLGRGGSTAVTAILIN 1
PDLG+GGSTAVTAIL+N
Sbjct: 121 PDLGQGGSTAVTAILLN 137
>ref|NP_565172.1| protein phosphatase 2C (PP2C); protein id: At1g78200.1, supported
by cDNA: gi_15081702 [Arabidopsis thaliana]
gi|22137096|gb|AAM91393.1| At1g78200/T11I11_14
[Arabidopsis thaliana]
Length = 283
Score = 164 bits (415), Expect = 7e-40
Identities = 84/136 (61%), Positives = 102/136 (74%), Gaps = 1/136 (0%)
Frame = -2
Query: 405 MDSLCCFSSVSQVVGGRSSSNSGKGKSSQSPVKYGFSLVKGKANHPMEDFHVAKFVEFKG 226
M +CC S +QVV + S NSGKG++ + +KYGFSL+KGK+NH MED+HVAKF F G
Sbjct: 1 MPKICCSRSATQVVVAQKS-NSGKGRNGEGGIKYGFSLIKGKSNHSMEDYHVAKFTNFNG 59
Query: 225 QELGLFAIYDGHLGDTVPAYLQKHLFPNILKEEDFWNDPFMSICKAYLSTDEAILS-HSP 49
ELGLFAI+DGH GD V AYLQKHLF NILK+ +F DP +I KAY +TD+ IL+ +
Sbjct: 60 NELGLFAIFDGHKGDHVAAYLQKHLFSNILKDGEFLVDPRRAIAKAYENTDQKILADNRT 119
Query: 48 DLGRGGSTAVTAILIN 1
DL GGSTAVTAILIN
Sbjct: 120 DLESGGSTAVTAILIN 135
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,322,843
Number of Sequences: 1393205
Number of extensions: 10038204
Number of successful extensions: 23921
Number of sequences better than 10.0: 161
Number of HSP's better than 10.0 without gapping: 23280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23907
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
