Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017289A_C01 KMC017289A_c01
(489 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_714341.1| thermolysin [Leptospira interrogans serovar lai... 31 6.5
ref|NP_782905.1| putative protease [Clostridium tetani E88] gi|2... 31 8.5
sp|P33453|RRPL_UUK RNA-directed RNA polymerase (L protein) gi|28... 31 8.5
>ref|NP_714341.1| thermolysin [Leptospira interrogans serovar lai str. 56601]
gi|24198237|gb|AAN51359.1|AE011570_2 thermolysin
[Leptospira interrogans serovar lai str. 56601]
Length = 781
Score = 31.2 bits (69), Expect = 6.5
Identities = 14/45 (31%), Positives = 27/45 (59%), Gaps = 3/45 (6%)
Frame = -1
Query: 432 RKGRSSTQFHSLEKI---KVEGERLELRDYVKSRGPPYYTYGFVR 307
++G ++T+F ++ I E + EL+DY + +G Y++ FVR
Sbjct: 275 KQGTAATRFSGIQSIITWTTEADHFELKDYSRGKGIVSYSWEFVR 319
>ref|NP_782905.1| putative protease [Clostridium tetani E88]
gi|28204404|gb|AAO36842.1| putative protease
[Clostridium tetani E88]
Length = 235
Score = 30.8 bits (68), Expect = 8.5
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = -2
Query: 209 FAMIHGYLELLLTG*KFGFFTGFSIFKIVWLYSVLDHSFPF*LFGSIMSSTIMY*KLN 36
FA+IH ++ G F F I K + Y+V +HSF F S+ + TI+ KLN
Sbjct: 180 FALIHFNVKSFPAILWIGIFNCFLIHKKGYWYAVFNHSF----FNSVSTITILIQKLN 233
>sp|P33453|RRPL_UUK RNA-directed RNA polymerase (L protein) gi|281371|pir||JQ1621 genome
polyprotein - Uukuniemi virus (strain S23)
gi|222689|dbj|BAA01590.1| RNA polymerase [Uukuniemi
virus]
Length = 2103
Score = 30.8 bits (68), Expect = 8.5
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 162 FLTSKEQL*ITMNHGKTRTWRIEIFKYLFS 251
F+TS E + + NHGKTRT + +F+ FS
Sbjct: 1663 FITSSEPITLKPNHGKTRTNVLSLFQDYFS 1692
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,972,490
Number of Sequences: 1393205
Number of extensions: 8042906
Number of successful extensions: 17151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17150
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
