Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017288A_C01 KMC017288A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178465.1| expressed protein; protein id: At2g03690.1, sup... 224 7e-58
ref|NP_593130.1| putative ubiquinone biosynthesis protein [Schiz... 112 4e-24
ref|NP_730270.1| CG32174-PB [Drosophila melanogaster] gi|2309325... 106 2e-22
ref|XP_130095.1| similar to Ubiquinone biosynthesis protein COQ4... 106 2e-22
dbj|BAC31585.1| unnamed protein product [Mus musculus] 106 2e-22
>ref|NP_178465.1| expressed protein; protein id: At2g03690.1, supported by cDNA:
18785., supported by cDNA: gi_17473562 [Arabidopsis
thaliana] gi|24211606|sp|Q9ZPR0|COQ4_ARATH Ubiquinone
biosynthesis protein COQ4 homolog
gi|25411031|pir||C84451 probable ubiquinone biosynthesis
protein [imported] - Arabidopsis thaliana
gi|4406761|gb|AAD20072.1| putative ubiquinone
biosynthesis protein [Arabidopsis thaliana]
gi|17473563|gb|AAL38257.1| putative ubiquinone
biosynthesis protein [Arabidopsis thaliana]
gi|21386913|gb|AAM47860.1| putative ubiquinone
biosynthesis protein [Arabidopsis thaliana]
gi|21553964|gb|AAM63045.1| putative ubiquinone
biosynthesis protein [Arabidopsis thaliana]
Length = 226
Score = 224 bits (570), Expect = 7e-58
Identities = 104/124 (83%), Positives = 110/124 (87%)
Frame = -3
Query: 543 PDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFDLPTNLIGESALKVIEFEQMYLPMCML 364
PDDRPPVRFM+TDELAYVA RAREVHD WHTLF LPTNLIGES+LKVIEFEQMYLPMCML
Sbjct: 102 PDDRPPVRFMETDELAYVATRAREVHDLWHTLFGLPTNLIGESSLKVIEFEQMYLPMCML 161
Query: 363 SVVGGTARFSEKQRKLFYQHYFPWAVRAGMQCTDLMCVYYERHFDEDLEDVRRKLQIIPA 184
SV+GGT RF+EKQR +F +HY PWAVRAG QCTDLMCVYYERHF EDLE VRRK IIPA
Sbjct: 162 SVIGGTVRFNEKQRSMFLKHYLPWAVRAGRQCTDLMCVYYERHFSEDLEQVRRKWGIIPA 221
Query: 183 PAVP 172
P P
Sbjct: 222 PQHP 225
>ref|NP_593130.1| putative ubiquinone biosynthesis protein [Schizosaccharomyces
pombe] gi|24211563|sp|O94453|COQ4_SCHPO Ubiquinone
biosynthesis protein COQ4 homolog gi|7493130|pir||T37755
probable ubiquinone biosynthesis protein - fission yeast
(Schizosaccharomyces pombe) gi|4106666|emb|CAA22606.1|
putative ubiquinone biosynthesis protein
[Schizosaccharomyces pombe]
Length = 272
Score = 112 bits (279), Expect = 4e-24
Identities = 54/121 (44%), Positives = 77/121 (63%)
Frame = -3
Query: 543 PDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFDLPTNLIGESALKVIEFEQMYLPMCML 364
PD R P RF+D E AYV R RE HDF+H + ++PTN+ GE A+K +EF M LP+ L
Sbjct: 149 PDTRSPTRFVDDPEEAYVMQRYRESHDFYHAICNMPTNIEGELAIKWLEFVNMGLPVGAL 208
Query: 363 SVVGGTARFSEKQRKLFYQHYFPWAVRAGMQCTDLMCVYYERHFDEDLEDVRRKLQIIPA 184
S + G R + +Q F + Y PW++R G+ L+ VY+E+ D+EDVRR+++I A
Sbjct: 209 SALFGPLRLNCEQASRFRRVYIPWSIRNGLNAKTLINVYWEKELTNDIEDVRRRIRIEAA 268
Query: 183 P 181
P
Sbjct: 269 P 269
>ref|NP_730270.1| CG32174-PB [Drosophila melanogaster] gi|23093259|gb|AAF49345.3|
CG32174-PB [Drosophila melanogaster]
Length = 268
Score = 106 bits (265), Expect = 2e-22
Identities = 49/117 (41%), Positives = 74/117 (62%)
Frame = -3
Query: 543 PDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFDLPTNLIGESALKVIEFEQMYLPMCML 364
PD R VRF++ +LAY+ R RE HD HT+ D+PTN++GE A+K +E LPMC
Sbjct: 146 PDSRMAVRFLEDPKLAYLMTRYRECHDLIHTVLDMPTNMLGEVAVKWVEALNTGLPMCYG 205
Query: 363 SVVGGTARFSEKQRKLFYQHYFPWAVRAGMQCTDLMCVYYERHFDEDLEDVRRKLQI 193
V G R KQR+ + +HY PWA+ G + LM VY+E+ +++++ ++R +L I
Sbjct: 206 GAVFGAVRLRPKQRRAYLKHYLPWALENGKRTKPLMPVYWEKRWEQNIHELRSELGI 262
>ref|XP_130095.1| similar to Ubiquinone biosynthesis protein COQ4 homolog (Coenzyme Q
biosynthesis protein 4 homolog) (CGI-92) [Mus musculus]
gi|26333253|dbj|BAC30344.1| unnamed protein product [Mus
musculus] gi|26333397|dbj|BAC30416.1| unnamed protein
product [Mus musculus] gi|26341214|dbj|BAC34269.1|
unnamed protein product [Mus musculus]
Length = 266
Score = 106 bits (264), Expect = 2e-22
Identities = 49/121 (40%), Positives = 73/121 (59%)
Frame = -3
Query: 543 PDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFDLPTNLIGESALKVIEFEQMYLPMCML 364
PD R P RF+D +ELAYV R REVHD HTL +PTN++GE +K E Q LPMC+L
Sbjct: 139 PDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNMLGEVVVKWFEAVQTGLPMCIL 198
Query: 363 SVVGGTARFSEKQRKLFYQHYFPWAVRAGMQCTDLMCVYYERHFDEDLEDVRRKLQIIPA 184
+ G R + ++ + PWA++ G + ++ +YYE+ +++ L +R +L I P
Sbjct: 199 GALFGPIRLRTQSLQVLFSELIPWAIQNGRRAPCVLNIYYEQRWEQPLTALREELGISPP 258
Query: 183 P 181
P
Sbjct: 259 P 259
>dbj|BAC31585.1| unnamed protein product [Mus musculus]
Length = 216
Score = 106 bits (264), Expect = 2e-22
Identities = 49/121 (40%), Positives = 73/121 (59%)
Frame = -3
Query: 543 PDDRPPVRFMDTDELAYVAMRAREVHDFWHTLFDLPTNLIGESALKVIEFEQMYLPMCML 364
PD R P RF+D +ELAYV R REVHD HTL +PTN++GE +K E Q LPMC+L
Sbjct: 89 PDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNMLGEVVVKWFEAVQTGLPMCIL 148
Query: 363 SVVGGTARFSEKQRKLFYQHYFPWAVRAGMQCTDLMCVYYERHFDEDLEDVRRKLQIIPA 184
+ G R + ++ + PWA++ G + ++ +YYE+ +++ L +R +L I P
Sbjct: 149 GALFGPIRLRTQSLQVLFSELIPWAIQNGRRAPCVLNIYYEQRWEQPLTALREELGISPP 208
Query: 183 P 181
P
Sbjct: 209 P 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,530,991
Number of Sequences: 1393205
Number of extensions: 9231672
Number of successful extensions: 27599
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 27079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27594
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
