Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017287A_C01 KMC017287A_c01
(1352 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197995.1| putative protein; protein id: At5g26230.1 [Arab... 100 9e-20
ref|NP_568610.1| expressed protein; protein id: At5g42750.1, sup... 54 4e-06
gb|AAM64772.1| unknown [Arabidopsis thaliana] 52 2e-05
dbj|BAB89753.1| P0506B12.25 [Oryza sativa (japonica cultivar-gro... 40 0.066
gb|AAB05810.1| super cysteine rich protein; SCRP [Homo sapiens] 38 0.33
>ref|NP_197995.1| putative protein; protein id: At5g26230.1 [Arabidopsis thaliana]
Length = 341
Score = 99.8 bits (247), Expect = 9e-20
Identities = 63/122 (51%), Positives = 74/122 (60%), Gaps = 14/122 (11%)
Frame = -3
Query: 1266 TTTATTTTT----MESGGGAGKRGWKENVGVLSHSFSGNL-RYPRRRRCVSSCPSSMRSS 1102
TTT TT T + SGGG LS SFSGNL +Y +R RC +SCPSSMRSS
Sbjct: 232 TTTVTTVTAAPTVVSSGGG------------LSISFSGNLMKYTKRGRCAASCPSSMRSS 279
Query: 1101 PSHSGLLSQKGVPAGVGGRD---------NSSMEELQSAIQGAIAHCKNSLIQSKTGVSN 949
P+HSG+L++ G P G +SSMEELQSAIQGAIAHCKNS++Q S
Sbjct: 280 PNHSGVLTRGGFPVHQGSCSSSSSNNNSVSSSMEELQSAIQGAIAHCKNSMLQKNLVSSL 339
Query: 948 EI 943
EI
Sbjct: 340 EI 341
>ref|NP_568610.1| expressed protein; protein id: At5g42750.1, supported by cDNA: 32890.
[Arabidopsis thaliana] gi|10177278|dbj|BAB10631.1|
gene_id:MJB21.13~unknown protein [Arabidopsis thaliana]
Length = 337
Score = 54.3 bits (129), Expect = 4e-06
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 6/62 (9%)
Frame = -3
Query: 1146 RRRCVSSCPSSMRSSPSHSGLL--SQKGVPAGVGGRDNSS----MEELQSAIQGAIAHCK 985
RR + S P+SMR+SP++SG L S G+ + G +SS MEELQ+AIQ AIAHCK
Sbjct: 264 RRGELFSAPASMRTSPTNSGHLRVSTAGLSSSSGSTSSSSSDSTMEELQAAIQAAIAHCK 323
Query: 984 NS 979
NS
Sbjct: 324 NS 325
>gb|AAM64772.1| unknown [Arabidopsis thaliana]
Length = 337
Score = 52.0 bits (123), Expect = 2e-05
Identities = 32/62 (51%), Positives = 41/62 (65%), Gaps = 6/62 (9%)
Frame = -3
Query: 1146 RRRCVSSCPSSMRSSPSHSGLL--SQKGVPAGVGGRDNSS----MEELQSAIQGAIAHCK 985
RR + S P+SMR+SP++SG L S G+ + G +SS ME LQ+AIQ AIAHCK
Sbjct: 264 RRGELFSAPASMRTSPTNSGHLRVSTAGLSSSSGSTSSSSSDSTMEXLQAAIQAAIAHCK 323
Query: 984 NS 979
NS
Sbjct: 324 NS 325
>dbj|BAB89753.1| P0506B12.25 [Oryza sativa (japonica cultivar-group)]
Length = 344
Score = 40.4 bits (93), Expect = 0.066
Identities = 26/64 (40%), Positives = 36/64 (55%), Gaps = 3/64 (4%)
Frame = -3
Query: 1161 LRYPRRRRCVSSCPSSMRSSPSHSGLLSQKGVPAGVGG---RDNSSMEELQSAIQGAIAH 991
+RY + S+ SS SS S S +LS +GVG R +S+ E+ + IQGAIA+
Sbjct: 242 IRYSSSNKTSSASSSSCSSSNSSSSILSS--TDSGVGPVLRRSSSASSEMDNPIQGAIAY 299
Query: 990 CKNS 979
CK S
Sbjct: 300 CKRS 303
>gb|AAB05810.1| super cysteine rich protein; SCRP [Homo sapiens]
Length = 46
Score = 38.1 bits (87), Expect = 0.33
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = +1
Query: 1240 CCCCCCCCCF 1269
CCCCCCCCCF
Sbjct: 25 CCCCCCCCCF 34
Score = 37.4 bits (85), Expect = 0.56
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 1240 CCCCCCCCCFLPRSLCF 1290
CCCCCCCCC CF
Sbjct: 18 CCCCCCCCCCCCCCCCF 34
Score = 36.6 bits (83), Expect = 0.95
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = +1
Query: 1240 CCCCCCCCCFLPRSLCFRQQR 1302
CCCCCCCCC C + +
Sbjct: 22 CCCCCCCCCCCCFCCCLKHSK 42
Score = 35.8 bits (81), Expect = 1.6
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 1240 CCCCCCCCC 1266
CCCCCCCCC
Sbjct: 13 CCCCCCCCC 21
Score = 35.8 bits (81), Expect = 1.6
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 1240 CCCCCCCCC 1266
CCCCCCCCC
Sbjct: 16 CCCCCCCCC 24
Score = 35.8 bits (81), Expect = 1.6
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 1240 CCCCCCCCC 1266
CCCCCCCCC
Sbjct: 17 CCCCCCCCC 25
Score = 35.8 bits (81), Expect = 1.6
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 1240 CCCCCCCCC 1266
CCCCCCCCC
Sbjct: 15 CCCCCCCCC 23
Score = 35.8 bits (81), Expect = 1.6
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 1240 CCCCCCCCC 1266
CCCCCCCCC
Sbjct: 14 CCCCCCCCC 22
Score = 35.8 bits (81), Expect = 1.6
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 1240 CCCCCCCCC 1266
CCCCCCCCC
Sbjct: 12 CCCCCCCCC 20
Score = 35.8 bits (81), Expect = 1.6
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 1240 CCCCCCCCC 1266
CCCCCCCCC
Sbjct: 11 CCCCCCCCC 19
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,153,313,136
Number of Sequences: 1393205
Number of extensions: 26269469
Number of successful extensions: 235058
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 89454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171711
length of database: 448,689,247
effective HSP length: 127
effective length of database: 271,752,212
effective search space used: 87775964476
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
