Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017286A_C01 KMC017286A_c01
(461 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09646 probable zinc finger protein - alfalfa (fragment) gi... 143 1e-33
gb|AAM65374.1| putative PHD-type zinc finger protein [Arabidopsi... 137 7e-32
ref|NP_178351.1| putative PHD-type zinc finger protein; protein ... 137 7e-32
pir||T00616 probable nucleic acid-binding protein T8K22.23 - Ara... 137 7e-32
ref|NP_172903.1| nucleic acid binding protein (alfin-1), putativ... 134 6e-31
>pir||T09646 probable zinc finger protein - alfalfa (fragment)
gi|12651665|gb|AAA20093.2| Alfin-1 [Medicago sativa]
Length = 257
Score = 143 bits (360), Expect = 1e-33
Identities = 63/74 (85%), Positives = 68/74 (91%), Gaps = 3/74 (4%)
Frame = -3
Query: 459 EENESGEEE--DDDEQGATCGACGENYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQ 286
EE +SGEEE DDDEQGATCGACG+NYGTDEFWICCDMCE+WFHGKCVKITPAKAEHIKQ
Sbjct: 184 EEVDSGEEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQ 243
Query: 285 YKCPSCS-KRARVG 247
YKCP CS K+ R+G
Sbjct: 244 YKCPGCSIKKPRIG 257
>gb|AAM65374.1| putative PHD-type zinc finger protein [Arabidopsis thaliana]
Length = 256
Score = 137 bits (344), Expect = 7e-32
Identities = 58/70 (82%), Positives = 64/70 (90%), Gaps = 1/70 (1%)
Frame = -3
Query: 459 EENESGEEEDDDEQGATCGACGENYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYK 280
EE+ES +E +DDEQGA CGACG+NYGTDEFWICCD CE+WFHGKCVKITPAKAEHIK YK
Sbjct: 186 EEDESEDESEDDEQGAVCGACGDNYGTDEFWICCDACEKWFHGKCVKITPAKAEHIKHYK 245
Query: 279 CPSCS-KRAR 253
CP+CS KRAR
Sbjct: 246 CPTCSNKRAR 255
>ref|NP_178351.1| putative PHD-type zinc finger protein; protein id: At2g02470.1,
supported by cDNA: 38635. [Arabidopsis thaliana]
gi|25346628|pir||A84437 probable PHD-type zinc finger
protein [imported] - Arabidopsis thaliana
gi|20197338|gb|AAM15031.1| putative PHD-type zinc finger
protein [Arabidopsis thaliana]
gi|28393037|gb|AAO41953.1| putative PHD-type zinc finger
protein [Arabidopsis thaliana]
gi|28827386|gb|AAO50537.1| putative PHD-type zinc finger
protein [Arabidopsis thaliana]
Length = 256
Score = 137 bits (344), Expect = 7e-32
Identities = 58/70 (82%), Positives = 64/70 (90%), Gaps = 1/70 (1%)
Frame = -3
Query: 459 EENESGEEEDDDEQGATCGACGENYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYK 280
EE+ES +E +DDEQGA CGACG+NYGTDEFWICCD CE+WFHGKCVKITPAKAEHIK YK
Sbjct: 186 EEDESEDESEDDEQGAVCGACGDNYGTDEFWICCDACEKWFHGKCVKITPAKAEHIKHYK 245
Query: 279 CPSCS-KRAR 253
CP+CS KRAR
Sbjct: 246 CPTCSNKRAR 255
>pir||T00616 probable nucleic acid-binding protein T8K22.23 - Arabidopsis
thaliana (fragment)
Length = 142
Score = 137 bits (344), Expect = 7e-32
Identities = 58/70 (82%), Positives = 64/70 (90%), Gaps = 1/70 (1%)
Frame = -3
Query: 459 EENESGEEEDDDEQGATCGACGENYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYK 280
EE+ES +E +DDEQGA CGACG+NYGTDEFWICCD CE+WFHGKCVKITPAKAEHIK YK
Sbjct: 72 EEDESEDESEDDEQGAVCGACGDNYGTDEFWICCDACEKWFHGKCVKITPAKAEHIKHYK 131
Query: 279 CPSCS-KRAR 253
CP+CS KRAR
Sbjct: 132 CPTCSNKRAR 141
>ref|NP_172903.1| nucleic acid binding protein (alfin-1), putative; protein id:
At1g14510.1, supported by cDNA: 41104. [Arabidopsis
thaliana] gi|21593666|gb|AAM65633.1| nucleic acid
binding protein (alfin-1), putative [Arabidopsis
thaliana]
Length = 252
Score = 134 bits (336), Expect = 6e-31
Identities = 53/65 (81%), Positives = 61/65 (93%)
Frame = -3
Query: 459 EENESGEEEDDDEQGATCGACGENYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYK 280
+E+ESG+E++DDEQGA CGACG+NYG DEFWICCD CE+WFHGKCVKITPAKAEHIK YK
Sbjct: 181 KEDESGDEDEDDEQGAVCGACGDNYGGDEFWICCDACEKWFHGKCVKITPAKAEHIKHYK 240
Query: 279 CPSCS 265
CPSC+
Sbjct: 241 CPSCT 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 374,856,861
Number of Sequences: 1393205
Number of extensions: 7410245
Number of successful extensions: 35981
Number of sequences better than 10.0: 448
Number of HSP's better than 10.0 without gapping: 29919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35251
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
