Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017276A_C01 KMC017276A_c01
(853 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197590.1| putative protein; protein id: At5g20900.1, supp... 92 1e-17
ref|NP_189930.1| putative protein; protein id: At3g43440.1 [Arab... 75 2e-12
dbj|BAC16504.1| contains ESTs C26074(C11585),AU092275(C11585)~un... 68 2e-10
gb|AAM64554.1| unknown [Arabidopsis thaliana] 57 5e-07
ref|NP_565096.1| expressed protein; protein id: At1g74950.1, sup... 57 5e-07
>ref|NP_197590.1| putative protein; protein id: At5g20900.1, supported by cDNA:
gi_13430543, supported by cDNA: gi_15293158 [Arabidopsis
thaliana] gi|13430544|gb|AAK25894.1|AF360184_1 unknown
protein [Arabidopsis thaliana]
gi|15293159|gb|AAK93690.1| unknown protein [Arabidopsis
thaliana]
Length = 187
Score = 92.0 bits (227), Expect = 1e-17
Identities = 56/142 (39%), Positives = 80/142 (55%), Gaps = 1/142 (0%)
Frame = -1
Query: 748 GSVKHFSNNNRPMPASGLNVVTPGRTQFAIYYNGSMHVYDGIPAEKVHEIMLIAAAAKSA 569
GSV+ N R P Q I++ GS+ V+DG+P+EKV EI+ IAA A
Sbjct: 32 GSVEKSINEVRSTEIQTAEPTVPPN-QLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMET 90
Query: 568 EMKSGIPFMSLIPTSPSSPQGTSNSLASPPSVSFPAEKSSICR-LQEFPIARRQSLQRFL 392
+ + I +S + + +++++ASP + FP + S CR + PIARR SLQRFL
Sbjct: 91 KNSTSISPVSSPALNRAPSFSSTSNVASPAAQPFPIQPISFCRSTADLPIARRHSLQRFL 150
Query: 391 EKRRMRLGSKNPYTTTTGRGAD 326
EKRR RL +KNPY T+ + D
Sbjct: 151 EKRRDRLVNKNPYPTSDFKKTD 172
>ref|NP_189930.1| putative protein; protein id: At3g43440.1 [Arabidopsis thaliana]
gi|11283485|pir||T47386 hypothetical protein T18D12.10 -
Arabidopsis thaliana gi|7288022|emb|CAB81784.1| putative
protein [Arabidopsis thaliana]
Length = 238
Score = 74.7 bits (182), Expect = 2e-12
Identities = 49/117 (41%), Positives = 63/117 (52%)
Frame = -1
Query: 673 TQFAIYYNGSMHVYDGIPAEKVHEIMLIAAAAKSAEMKSGIPFMSLIPTSPSSPQGTSNS 494
+Q I + GS V+DGIPAEKV EI+ IAAAAK+ E ++L +P+ + S S
Sbjct: 130 SQLTIIFGGSFSVFDGIPAEKVQEILHIAAAAKATET------INLTSINPALKRAISFS 183
Query: 493 LASPPSVSFPAEKSSICRLQEFPIARRQSLQRFLEKRRMRLGSKNPYTTTTGRGADN 323
AS + A + PIARR+SLQRF EKRR R PY+ TT N
Sbjct: 184 NASTVACVSTA---------DVPIARRRSLQRFFEKRRHRFVHTKPYSATTSEADKN 231
Score = 57.0 bits (136), Expect = 3e-07
Identities = 38/100 (38%), Positives = 52/100 (52%)
Frame = -1
Query: 673 TQFAIYYNGSMHVYDGIPAEKVHEIMLIAAAAKSAEMKSGIPFMSLIPTSPSSPQGTSNS 494
TQ I + GS V++G+PA+KV EI+ IA A K + +GI +P+ + S S
Sbjct: 44 TQLTIIFGGSCRVFNGVPAQKVQEIIRIAFAGKQTKNVTGI--------NPALNRALSFS 95
Query: 493 LASPPSVSFPAEKSSICRLQEFPIARRQSLQRFLEKRRMR 374
+ + PIARR+SLQRFLEKRR R
Sbjct: 96 TVA-----------------DLPIARRRSLQRFLEKRRDR 118
>dbj|BAC16504.1| contains ESTs C26074(C11585),AU092275(C11585)~unknown protein
[Oryza sativa (japonica cultivar-group)]
Length = 244
Score = 67.8 bits (164), Expect = 2e-10
Identities = 35/111 (31%), Positives = 58/111 (51%), Gaps = 1/111 (0%)
Frame = -1
Query: 682 PGRTQFAIYYNGSMHVYDGIPAEKVHEIMLIAAAAKS-AEMKSGIPFMSLIPTSPSSPQG 506
P + Q I+Y G + V++ PA+K +M +A+ A + P + + + +P
Sbjct: 99 PEKRQLTIFYGGKVLVFNDFPADKAKGLMQLASKGSPVAPQNAAAPAPAAVTDNTKAPMA 158
Query: 505 TSNSLASPPSVSFPAEKSSICRLQEFPIARRQSLQRFLEKRRMRLGSKNPY 353
++S P+ A+K + + PIAR+ SL RFLEKR+ RL +K PY
Sbjct: 159 VPAPVSSLPTAQADAQKPARANASDMPIARKASLHRFLEKRKDRLNAKTPY 209
>gb|AAM64554.1| unknown [Arabidopsis thaliana]
Length = 249
Score = 56.6 bits (135), Expect = 5e-07
Identities = 55/180 (30%), Positives = 78/180 (42%), Gaps = 14/180 (7%)
Frame = -1
Query: 850 CEPRGRDFAAS-----PQSLADSNGRNDSMEVQNNLSDEGSVKHFSNNNRPMPASGLNVV 686
CE G D +A P+++ S D +K + + +P S
Sbjct: 63 CEASGMDSSAGQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSA---- 118
Query: 685 TPGRTQFAIYYNGSMHVYDGIPAEKVHEIMLIA--AAAKS-----AEMKSGIPFMSL--I 533
I+Y G + V+D AEK E++ +A +AKS AE+ + S I
Sbjct: 119 -----PLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEI 173
Query: 532 PTSPSSPQGTSNSLASPPSVSFPAEKSSICRLQEFPIARRQSLQRFLEKRRMRLGSKNPY 353
+SP+ + + A P PA S C E PIARR SL RFLEKR+ R+ SK PY
Sbjct: 174 ASSPNPVCSPAKTAAQEPIQPKPA--SLAC---ELPIARRASLHRFLEKRKDRITSKAPY 228
>ref|NP_565096.1| expressed protein; protein id: At1g74950.1, supported by cDNA:
3024., supported by cDNA: gi_12744980, supported by
cDNA: gi_14423443 [Arabidopsis thaliana]
gi|25406399|pir||C96779 unknown protein F9E10.20
[imported] - Arabidopsis thaliana
gi|5882728|gb|AAD55281.1|AC008263_12 ESTs gb|T75898,
gb|R65457, gb|AA597517 and gb|AA597420 come from this
gene. [Arabidopsis thaliana]
gi|12323902|gb|AAG51928.1|AC013258_22 unknown protein;
53109-54448 [Arabidopsis thaliana]
gi|12744981|gb|AAK06870.1|AF344319_1 unknown protein
[Arabidopsis thaliana]
gi|14423444|gb|AAK62404.1|AF386959_1 Unknown protein
[Arabidopsis thaliana]
Length = 249
Score = 56.6 bits (135), Expect = 5e-07
Identities = 55/180 (30%), Positives = 78/180 (42%), Gaps = 14/180 (7%)
Frame = -1
Query: 850 CEPRGRDFAAS-----PQSLADSNGRNDSMEVQNNLSDEGSVKHFSNNNRPMPASGLNVV 686
CE G D +A P+++ S D +K + + +P S
Sbjct: 63 CEASGMDSSAGQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSA---- 118
Query: 685 TPGRTQFAIYYNGSMHVYDGIPAEKVHEIMLIA--AAAKS-----AEMKSGIPFMSL--I 533
I+Y G + V+D AEK E++ +A +AKS AE+ + S I
Sbjct: 119 -----PLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEI 173
Query: 532 PTSPSSPQGTSNSLASPPSVSFPAEKSSICRLQEFPIARRQSLQRFLEKRRMRLGSKNPY 353
+SP+ + + A P PA S C E PIARR SL RFLEKR+ R+ SK PY
Sbjct: 174 ASSPNPVCSPAKTAAQEPIQPNPA--SLAC---ELPIARRASLHRFLEKRKDRITSKAPY 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 733,621,091
Number of Sequences: 1393205
Number of extensions: 16210234
Number of successful extensions: 48380
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 43799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48079
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44873636157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
