Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017271A_C01 KMC017271A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61098.1| unknown [Arabidopsis thaliana] 49 4e-05
ref|NP_565045.1| expressed protein; protein id: At1g72650.1, sup... 49 4e-05
ref|NP_671929.1| unknown protein; protein id: At2g37025.1 [Arabi... 46 3e-04
pir||B96751 hypothetical protein F28P22.16 [imported] - Arabidop... 42 0.005
ref|NP_564025.2| hypothetical protein; protein id: At1g17460.1, ... 39 0.065
>gb|AAM61098.1| unknown [Arabidopsis thaliana]
Length = 624
Score = 49.3 bits (116), Expect = 4e-05
Identities = 26/56 (46%), Positives = 36/56 (63%)
Frame = -1
Query: 593 SSSSYRTPIDLRDKWRNLLRSSSAQKCSKKEAEENDDIALRPLPSNVARRVRELAK 426
SS SYRT +DL+DKWRNLL++S AQ S ++ +P+ + RVRELA+
Sbjct: 566 SSHSYRTSVDLKDKWRNLLKTSFAQSPSNSVGSLKKHGSMH-IPTQILLRVRELAE 620
>ref|NP_565045.1| expressed protein; protein id: At1g72650.1, supported by cDNA:
110945., supported by cDNA: gi_15010653 [Arabidopsis
thaliana] gi|15010654|gb|AAK73986.1| At1g72650/F28P22_16
[Arabidopsis thaliana] gi|21700907|gb|AAM70577.1|
At1g72650/F28P22_16 [Arabidopsis thaliana]
Length = 624
Score = 49.3 bits (116), Expect = 4e-05
Identities = 26/56 (46%), Positives = 36/56 (63%)
Frame = -1
Query: 593 SSSSYRTPIDLRDKWRNLLRSSSAQKCSKKEAEENDDIALRPLPSNVARRVRELAK 426
SS SYRT +DL+DKWRNLL++S AQ S ++ +P+ + RVRELA+
Sbjct: 566 SSHSYRTSVDLKDKWRNLLKTSFAQSPSNSVGSLKKHGSMH-IPTQILLRVRELAE 620
>ref|NP_671929.1| unknown protein; protein id: At2g37025.1 [Arabidopsis thaliana]
Length = 404
Score = 46.2 bits (108), Expect = 3e-04
Identities = 19/48 (39%), Positives = 32/48 (66%)
Frame = -1
Query: 587 SSYRTPIDLRDKWRNLLRSSSAQKCSKKEAEENDDIALRPLPSNVARR 444
+++R P+D+RDKWRNLL++S +K + +AEE R +P ++ R
Sbjct: 335 AAHRKPVDIRDKWRNLLKASYNEKHNDGQAEEKRKSVARSIPKDILHR 382
>pir||B96751 hypothetical protein F28P22.16 [imported] - Arabidopsis thaliana
gi|12323779|gb|AAG51859.1|AC010926_22 hypothetical
protein; 60264-57191 [Arabidopsis thaliana]
Length = 622
Score = 42.4 bits (98), Expect = 0.005
Identities = 19/28 (67%), Positives = 23/28 (81%)
Frame = -1
Query: 593 SSSSYRTPIDLRDKWRNLLRSSSAQKCS 510
SS SYRT +DL+DKWRNLL++S AQ S
Sbjct: 577 SSHSYRTSVDLKDKWRNLLKTSFAQSPS 604
>ref|NP_564025.2| hypothetical protein; protein id: At1g17460.1, supported by cDNA:
gi_19347779 [Arabidopsis thaliana]
gi|19347780|gb|AAL86341.1| unknown protein [Arabidopsis
thaliana] gi|21689877|gb|AAM67499.1| unknown protein
[Arabidopsis thaliana]
Length = 604
Score = 38.5 bits (88), Expect = 0.065
Identities = 20/56 (35%), Positives = 39/56 (68%)
Frame = -1
Query: 593 SSSSYRTPIDLRDKWRNLLRSSSAQKCSKKEAEENDDIALRPLPSNVARRVRELAK 426
S ++RT +DL+DKWRNL ++SS+ + + +++ +A +P+++ +VRELA+
Sbjct: 528 SPYTHRTTVDLKDKWRNLQKASSSNR-MEGGLKKHGSMA---IPTHIMLQVRELAQ 579
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,291,956
Number of Sequences: 1393205
Number of extensions: 9760389
Number of successful extensions: 22924
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 22384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22918
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
