KMC017268A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC017268A_C01 KMC017268A_c01
gttcccgagaagaaacagtcaaatTCCTTCGACGTAGAGATGGCTCGTACCAAGCAAACT
GCTCGTAAGTCAACTGGTGGAAAGGCTCCAAGGAAGCAGCTGGCAACTAAGGCTGCACGT
AAGTCTGCACCAACTACTGGTGGTGTGAAGAAGCCTCATCGTTACCGTCCTGGAACTGTT
GCTCTTCGTGAGATTAGGAAGTACCAGAAGAGTACTGAGCTGCTGATCAGGAAGCTCCCC
TTCCAGAGGCTGGTTCGTGAGATTGCTCAGGATTTCAAGACTGATCTCCGTTTCCAGAGT
CATGCTGTGCTTGCATTGCAAGAGGCTGCTGAGGCATACCTTGTTGGACTGTTTGAGGAC
ACCAACCTGTGTGCCATTCACGCCAAGCGTGTCACTATCATGCCCAAGGATATCCAGCTG
GCTAGGAGGATCCGTGGAGAGCGCGCTTAAGGTGTGGCTGGGTTCGGTGCTGTGGCTGCG
GATGGTGTTTGTTAGGGAATAGGTGTTTACTGGTAGTGTTTAATTGTGATAGGAGTATAC
TGCTATGGATTTGTGAAGGTCTTATTTTTAAGGATTTGGAAGTAATTGTTCTTTAGCGTT
TTGATTGTGTCAAATGTTTGTTTCTTATGGATTGGCAGCCACTTGGGAATGTATTGGACA
ACTTATTGTTGCCATCTAATCTAGTGATGCTTAGCTTATTTTGTTTTGAACTTGGAAATT
ACnATCTTATGTTCTAAATTGATGATTGCATTATGCCATTATGTCGCCACTGCTtttagc
gcttccctatcttgtgaatgaaaccacagactgctattatttacaaaaaaaaaaaaaaaa
aaactcgggggggc
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017268A_C01 KMC017268A_c01
(854 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195713.1| histone H3.3; protein id: At4g40030.1, supporte... 266 4e-70
gb|AAL78367.1|AF467728_1 disease-resistent-related protein [Oryz... 264 1e-69
pir||I49395 histone H3.2 protein - shrew mouse gi|515005|emb|CAA... 258 1e-67
gb|AAO06264.1| histone protein Hist2h3c1 [Mus musculus] 257 1e-67
ref|NP_038576.1| histone 1, H3f; histone gene complex 1 [Mus mus... 257 1e-67
>ref|NP_195713.1| histone H3.3; protein id: At4g40030.1, supported by cDNA:
gi_14326561 [Arabidopsis thaliana]
gi|15236105|ref|NP_195714.1| Histon H3; protein id:
At4g40040.1, supported by cDNA: 2670. [Arabidopsis
thaliana] gi|15238916|ref|NP_196659.1| histon H3
protein; protein id: At5g10980.1, supported by cDNA:
gi_17979504, supported by cDNA: gi_20453304 [Arabidopsis
thaliana] gi|417103|sp|P11105|H32_MEDSA Histone H3.2,
minor gi|27734400|sp|P59169|H33_ARATH Histone H3.3
gi|282871|pir||S24346 histon H3 protein [similarity] -
Arabidopsis thaliana gi|16324|emb|CAA42957.1| histone
H3.3 like protein [Arabidopsis thaliana]
gi|404825|emb|CAA42958.1| histone H3.3 like protein
[Arabidopsis thaliana] gi|488563|gb|AAB49538.1| histone
H3.2 gi|488567|gb|AAB36493.1| histone H3.2
gi|488569|gb|AAB36494.1| histone H3.2
gi|488575|gb|AAB36497.1| histone H3.2
gi|488577|gb|AAB36498.1| histone H3.2
gi|510911|emb|CAA56153.1| histone H3 [Lolium temulentum]
gi|1435157|emb|CAA58445.1| histone H3 variant H3.3
[Lycopersicon esculentum] gi|2558944|gb|AAB97162.1|
histone 3 [Gossypium hirsutum]
gi|3273350|dbj|BAA31218.1| histone H3 [Nicotiana
tabacum] gi|3885890|gb|AAC78105.1| histone H3 [Oryza
sativa] gi|4038469|gb|AAC97380.1| histone H3 [Porteresia
coarctata] gi|4490754|emb|CAB38916.1| histone H3.3
[Arabidopsis thaliana] gi|4490755|emb|CAB38917.1| Histon
H3 [Arabidopsis thaliana] gi|6006364|dbj|BAA84794.1| EST
D15300(C0425) corresponds to a region of the predicted
gene.~Similar to histone H3 (AB015760) [Oryza sativa
(japonica cultivar-group)] gi|7271058|emb|CAB80666.1|
histone H3.3 [Arabidopsis thaliana]
gi|7271059|emb|CAB80667.1| Histon H3 [Arabidopsis
thaliana] gi|8979732|emb|CAB96853.1| histon H3 protein
[Arabidopsis thaliana]
gi|14326562|gb|AAK60325.1|AF385735_1 AT4g40030/T5J17_200
[Arabidopsis thaliana] gi|17979505|gb|AAL50088.1|
AT5g10980/T30N20_250 [Arabidopsis thaliana]
gi|18700236|gb|AAL77728.1| AT4g40030/T5J17_200
[Arabidopsis thaliana] gi|20453305|gb|AAM19891.1|
AT5g10980/T30N20_250 [Arabidopsis thaliana]
gi|21554902|gb|AAM63725.1| histon H3 protein
[Arabidopsis thaliana] gi|27311571|gb|AAO00751.1| Histon
H3 [Arabidopsis thaliana] gi|28058719|gb|AAO29945.1|
Histone H3 [Arabidopsis thaliana]
Length = 136
Score = 266 bits (679), Expect = 4e-70
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 40 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 219
MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 220 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 399
LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 400 MPKDIQLARRIRGERA 447
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>gb|AAL78367.1|AF467728_1 disease-resistent-related protein [Oryza sativa]
Length = 136
Score = 264 bits (675), Expect = 1e-69
Identities = 135/136 (99%), Positives = 136/136 (99%)
Frame = +1
Query: 40 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 219
MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 220 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 399
LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 400 MPKDIQLARRIRGERA 447
MPKDI+LARRIRGERA
Sbjct: 121 MPKDIKLARRIRGERA 136
>pir||I49395 histone H3.2 protein - shrew mouse gi|515005|emb|CAA56575.1|
histone H3.2 protein [Mus pahari]
Length = 136
Score = 258 bits (658), Expect = 1e-67
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 40 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 219
MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 220 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 399
LLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 400 MPKDIQLARRIRGERA 447
MPKDIQL RRIRGERA
Sbjct: 121 MPKDIQLVRRIRGERA 136
>gb|AAO06264.1| histone protein Hist2h3c1 [Mus musculus]
Length = 181
Score = 257 bits (657), Expect = 1e-67
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 40 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 219
MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 46 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 105
Query: 220 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 399
LLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 106 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 165
Query: 400 MPKDIQLARRIRGERA 447
MPKDIQLARRIRGERA
Sbjct: 166 MPKDIQLARRIRGERA 181
>ref|NP_038576.1| histone 1, H3f; histone gene complex 1 [Mus musculus]
gi|20345275|ref|XP_109316.1| similar to CG31613-PA
[Drosophila melanogaster] [Mus musculus]
gi|20345943|ref|XP_110063.1| similar to CG31613-PA
[Drosophila melanogaster] [Mus musculus]
gi|20892727|ref|XP_122524.1| similar to CG31613-PA
[Drosophila melanogaster] [Mus musculus]
gi|21489953|ref|NP_473386.1| Histone 3.2-614; expressed
sequence M32461 [Mus musculus]
gi|22748793|ref|NP_689581.1| H3 histone; H3 histone,
family 2; H3 histone family, member M [Homo sapiens]
gi|24585677|ref|NP_724345.1| CG31613-PA [Drosophila
melanogaster] gi|25052869|ref|XP_193709.1| similar to
CG31613-PA [Drosophila melanogaster] [Mus musculus]
gi|25052873|ref|XP_193173.1| similar to CG31613-PA
[Drosophila melanogaster] [Mus musculus]
gi|27693620|ref|XP_227460.1| similar to CG31613-PA
[Drosophila melanogaster] [Rattus norvegicus]
gi|27693625|ref|XP_227461.1| similar to CG31613-PA
[Drosophila melanogaster] [Rattus norvegicus]
gi|28492281|ref|XP_283884.1| Histone 3.2-614 [Mus
musculus] gi|122068|sp|P16105|H32_BOVIN Histone H3
(H3.2) gi|102611|pir||S11315 histone H3 - polychaete
(Platynereis dumerilii) gi|103050|pir||S09655 histone H3
- fruit fly (Drosophila hydei) gi|109978|pir||JH0304
histone H3.2 - mouse gi|1078925|pir||A56618 histone H3 -
spoonworm (Urechis caupo) gi|1085856|pir||A56654 histone
H3 - Tigriopus californicus gi|2119005|pir||A56580
histone H3 - midge (Chironomus thummi thummi)
gi|2119019|pir||I50460 H3 histone - muscovy duck
gi|2119020|pir||I51448 histone H3 - African clawed frog
gi|2119021|pir||I49397 histone H3.2 protein - shrew
mouse gi|2144743|pir||HSCH3 histone H3 - chicken
gi|6980691|pdb|2HIO|C Chain C, Histone Octamer
(Chicken), Chromosomal Protein gi|7767074|pdb|1EQZ|C
Chain C, X-Ray Structure Of The Nucleosome Core Particle
At 2.5 A Resolution gi|7767078|pdb|1EQZ|G Chain G, X-Ray
Structure Of The Nucleosome Core Particle At 2.5 A
Resolution gi|13096387|pdb|1HQ3|C Chain C, Crystal
Structure Of The Histone-Core-Octamer In KclPHOSPHATE
gi|13096391|pdb|1HQ3|G Chain G, Crystal Structure Of The
Histone-Core-Octamer In KclPHOSPHATE
gi|7083|emb|CAA39771.1| histone H3 [Chironomus thummi]
gi|7433|emb|CAA36805.1| histone H3 [Drosophila hydei]
gi|7439|emb|CAA34919.1| histone H3 [Drosophila hydei]
gi|9821|emb|CAA37417.1| H3 protein (AA 1 - 136)
[Platynereis dumerilii] gi|10615|emb|CAA36638.1| histone
H3 [Tigriopus californicus] gi|10863|emb|CAA41696.1| H3
histone [Urechis caupo] gi|51319|emb|CAA25840.1| histone
H3 (H3.2) (aa 1-136) [Mus musculus]
gi|62734|emb|CAA32855.1| H3 histone (AA 1-136) [Cairina
moschata] gi|62735|emb|CAA32856.1| H3 histone (AA 1-136)
[Cairina moschata] gi|63474|emb|CAA26138.1| H3 (aa
1-136) [Gallus gallus] gi|63482|emb|CAA44180.1| histone
H3-IV [Gallus gallus] gi|63484|emb|CAA44181.1| histone
H3-V [Gallus gallus] gi|64326|emb|CAA25529.1| histone H3
[Oncorhynchus mykiss] gi|64772|emb|CAA26813.1| H3 (aa
1-136) [Xenopus laevis] gi|64778|emb|CAA26818.1| histone
H3 (aa 1-136) [Xenopus laevis] gi|64781|emb|CAA26890.1|
H3 (aa 1-135) [Xenopus laevis] gi|161895|gb|AAC41552.1|
histone H3 gi|211857|gb|AAA48796.1| histone H3
gi|214279|gb|AAA49765.1| histone H3
gi|297563|emb|CAA51324.1| histone H3 [Chironomus thummi]
gi|387183|gb|AAA37764.1| histone H3.2
gi|387195|gb|AAA37810.1| histone H3
gi|387197|gb|AAA37812.1| histone H3
gi|455387|gb|AAA49770.1| histone H3
gi|515836|emb|CAA56577.1| histone H3 protein [Mus
musculus] gi|516331|emb|CAA56573.1| histone H3.2 protein
[Mus pahari] gi|1458128|gb|AAB04760.1| histone H3.2-F
[Mus musculus] gi|1458134|gb|AAB04764.1| histone H3.2-B
[Mus musculus] gi|1458144|gb|AAB04771.1| histone
H3.2-615 [Mus musculus] gi|1458146|gb|AAB04772.1|
histone H3.2-616 [Mus musculus]
gi|1493815|gb|AAC60003.1| histone H3-VI
gi|1493817|gb|AAC60004.1| histone H3-VII
gi|1493819|gb|AAC60005.1| histone H3-VIII
gi|2564107|gb|AAC15916.1| histone H3 [Chaetopterus
variopedatus] gi|7415970|dbj|BAA93621.1| histone H3
[Drosophila melanogaster] gi|7415972|dbj|BAA93622.1|
histone H3 [Drosophila simulans]
gi|7415974|dbj|BAA93623.1| histone H3 [Drosophila
sechellia] gi|7415976|dbj|BAA93624.1| histone H3
[Drosophila mauritiana] gi|7415978|dbj|BAA93625.1|
histone H3 [Drosophila teissieri]
gi|7415980|dbj|BAA93626.1| histone H3 [Drosophila
yakuba] gi|7415984|dbj|BAA93628.1| histone H3
[Drosophila orena] gi|12845343|dbj|BAB26714.1| unnamed
protein product [Mus musculus]
gi|12861001|dbj|BAB32097.1| unnamed protein product [Mus
musculus] gi|14269420|gb|AAK58062.1|AF378198_2 histone
H3 [Rhynchosciara americana] gi|15929686|gb|AAH15270.1|
histone gene complex 1 [Mus musculus]
gi|15930226|gb|AAH15544.1|AAH15544 histone gene complex
1 [Homo sapiens] gi|21290860|gb|EAA03005.1| agCP1951
[Anopheles gambiae str. PEST] gi|21291252|gb|EAA03397.1|
agCP3089 [Anopheles gambiae str. PEST]
gi|21291260|gb|EAA03405.1| agCP4293 [Anopheles gambiae
str. PEST] gi|21291261|gb|EAA03406.1| agCP4292
[Anopheles gambiae str. PEST] gi|21298353|gb|EAA10498.1|
agCP2086 [Anopheles gambiae str. PEST]
gi|21301528|gb|EAA13673.1| agCP7628 [Anopheles gambiae
str. PEST] gi|21307835|gb|AAL54861.1| histone H3
[Aplysia californica] gi|22947019|gb|AAN11127.1|
CG31613-PA [Drosophila melanogaster]
gi|23304758|emb|CAD37818.1| histone H3 [Mytilus edulis]
gi|23304763|emb|CAD37822.1| histone H3 [Mytilus edulis]
gi|23304766|emb|CAD37824.1| histone H3 [Mytilus edulis]
gi|23664258|gb|AAN39283.1| histone H3 [Homo sapiens]
gi|27372706|gb|AAO06251.1| histone protein Hist2h2bb
[Mus musculus] gi|27372718|gb|AAO06257.1| histone
protein Hist1h3f [Mus musculus]
gi|27372720|gb|AAO06258.1| histone protein Hist1h3e [Mus
musculus] gi|27372722|gb|AAO06259.1| histone protein
Hist1h3d [Mus musculus] gi|27372724|gb|AAO06260.1|
histone protein Hist1h3c [Mus musculus]
gi|27372726|gb|AAO06261.1| histone protein Hist1h3b [Mus
musculus] gi|27372734|gb|AAO06265.1| histone protein
Hist2h3b [Mus musculus]
Length = 136
Score = 257 bits (657), Expect = 1e-67
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 40 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 219
MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 220 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 399
LLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 400 MPKDIQLARRIRGERA 447
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 754,052,140
Number of Sequences: 1393205
Number of extensions: 17006177
Number of successful extensions: 53727
Number of sequences better than 10.0: 541
Number of HSP's better than 10.0 without gapping: 49242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53387
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45152354394
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
|
|
clone |
accession |
position |
| 1 |
MFBL050d05_f |
BP043816 |
1 |
490 |
| 2 |
SPD020d01_f |
BP045566 |
7 |
491 |
| 3 |
SPD068h05_f |
BP049473 |
24 |
450 |
| 4 |
MFB026g01_f |
BP035911 |
27 |
590 |
| 5 |
MFB057e12_f |
BP038137 |
28 |
580 |
| 6 |
SPD001h07_f |
BP044112 |
253 |
857 |
| 7 |
MFBL016a06_f |
BP042039 |
358 |
696 |
|
Lotus japonicus
Kazusa DNA Research Institute