Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017256A_C01 KMC017256A_c01
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM21342.1|AF373601_1 MADS-box protein 2 [Vitis vinifera] 62 6e-09
emb|CAC83066.1| MADS-box protein [Lycopersicon esculentum] 61 1e-08
gb|AAM33104.2| TAGL2 transcription factor [Lycopersicon esculentum] 61 1e-08
emb|CAC81072.1| MADS box transcription factor [Daucus carota sub... 60 3e-08
pir||B39534 MADS box protein AGL2 - Arabidopsis thaliana gi|1665... 59 7e-08
>gb|AAM21342.1|AF373601_1 MADS-box protein 2 [Vitis vinifera]
Length = 244
Score = 62.0 bits (149), Expect = 6e-09
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = -1
Query: 640 LLETNNILRNKLEEIDVA--IQTAWEGREQNAPYSYPP-QSEGYYETPHCNSTLRIGYDP 470
L+E+N L KL+EI V +Q +WE EQ+ PY + QS+G+++ CN TL+IGY+P
Sbjct: 161 LVESNKALTRKLDEISVKNHLQLSWESGEQSMPYGHQQAQSQGFFQPLECNPTLQIGYNP 220
Query: 469 SVVNNEAGGGEGTSAQTTNQFMHGWV 392
+ + ++AQ N F+ GW+
Sbjct: 221 A---GSSQLSAPSNAQNVNGFIPGWM 243
>emb|CAC83066.1| MADS-box protein [Lycopersicon esculentum]
Length = 246
Score = 61.2 bits (147), Expect = 1e-08
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Frame = -1
Query: 634 ETNNILRNKLEEI--DVAIQTAWEGREQNAPYSYP--PQSEGYYETPHCNSTLRIGYDPS 467
E N +L K+EEI + +Q AW G EQ+ Y PQS+G+++ CNS+L+IGYDP
Sbjct: 163 EANKVLERKMEEIYAENNMQQAWGGGEQSLNYGQQQHPQSQGFFQPLECNSSLQIGYDPI 222
Query: 466 VVNNEAGGGEGTSAQTTNQFMHGWV 392
+++ T+AQ N + GW+
Sbjct: 223 TTSSQITA--VTNAQNVNGMIPGWM 245
>gb|AAM33104.2| TAGL2 transcription factor [Lycopersicon esculentum]
Length = 246
Score = 61.2 bits (147), Expect = 1e-08
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Frame = -1
Query: 634 ETNNILRNKLEEI--DVAIQTAWEGREQNAPYSYP--PQSEGYYETPHCNSTLRIGYDPS 467
E N +L K+EEI + +Q AW G EQ+ Y PQS+G+++ CNS+L+IGYDP
Sbjct: 163 EANKVLERKMEEIYAENNMQQAWGGGEQSLNYGQQQHPQSQGFFQPLECNSSLQIGYDPI 222
Query: 466 VVNNEAGGGEGTSAQTTNQFMHGWV 392
+++ T+AQ N + GW+
Sbjct: 223 TTSSQITA--VTNAQNVNGMIPGWM 245
>emb|CAC81072.1| MADS box transcription factor [Daucus carota subsp. sativus]
Length = 246
Score = 59.7 bits (143), Expect = 3e-08
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Frame = -1
Query: 640 LLETNNILRNKLEEIDVAIQTAWEGREQN--APYSYP---PQSEGYYETPHCNSTLRIGY 476
L+E N LRNKLEE DV IQ+ WE E+N A S+P P G +E+ CN+T+ +GY
Sbjct: 160 LVEINKALRNKLEENDVRIQSQWEAAERNNVAYRSHPAEHPPDHGVFESLECNNTMHMGY 219
Query: 475 DPSVVNNEAGGGEGTSAQTTNQFMHGWV 392
+ ++ N+ T Q + + GW+
Sbjct: 220 NSAM--NDHQMASATPTQNASGVIPGWM 245
>pir||B39534 MADS box protein AGL2 - Arabidopsis thaliana
gi|166591|gb|AAA32732.1| transcription factor
Length = 248
Score = 58.5 bits (140), Expect = 7e-08
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Frame = -1
Query: 640 LLETNNILRNKLEEIDVAIQT----AWEGREQNAPYSY-PPQSEGYYETPHCNSTLRIGY 476
LLETN L KL+++ + +++ WEG EQN Y++ QS+G Y+ CN TL++GY
Sbjct: 161 LLETNRALAMKLDDM-IGVRSHHMGGWEGGEQNVTYAHHQAQSQGLYQPLECNPTLQMGY 219
Query: 475 DPSVVNNEAGGGEGTSAQTTNQFMHGWV 392
D V + + AQ N ++ GW+
Sbjct: 220 DNPVCSEQITATTQAQAQPGNGYIPGWM 247
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,860,745
Number of Sequences: 1393205
Number of extensions: 11565050
Number of successful extensions: 28407
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 27610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28384
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
