Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017246A_C01 KMC017246A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O22607|MSI4_ARATH WD-40 repeat protein MSI4 gi|25411913|pir||... 160 1e-38
ref|NP_565456.1| putative WD-40 repeat protein, MSI4; protein id... 160 1e-38
gb|AAD03340.1| WD-40 repeat protein MSI4 [Arabidopsis thaliana] 158 5e-38
gb|AAF97517.1|AF250047_1 WD-repeat protein RBAP1 [Zea mays] 152 4e-36
gb|AAK67147.1|AF384037_1 nucleosome/chromatin assembly factor C ... 152 4e-36
>sp|O22607|MSI4_ARATH WD-40 repeat protein MSI4 gi|25411913|pir||G84577 probable WD-40
repeat protein, MSI4 [imported] - Arabidopsis thaliana
gi|16323103|gb|AAL15286.1| At2g19520/F3P11.12
[Arabidopsis thaliana] gi|16648859|gb|AAL24281.1|
putative WD-40 repeat protein, MSI4 [Arabidopsis
thaliana] gi|20148237|gb|AAM10009.1| putative WD-40
repeat protein, MSI4 [Arabidopsis thaliana]
Length = 507
Score = 160 bits (405), Expect = 1e-38
Identities = 75/90 (83%), Positives = 81/90 (89%), Gaps = 3/90 (3%)
Frame = -1
Query: 571 DRASRKS---INTPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIW 401
DR S+KS +P GLFFQHAGHRDKVVDFHWNA DPWTIVSVSDDCE+TGGGGTLQIW
Sbjct: 417 DRVSKKSDRAAKSPAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIW 476
Query: 400 RMSDLIYRPEEEVLAELEKFKAHVVACASK 311
RMSDLIYRPEEEV+AELEKFK+HV+ CASK
Sbjct: 477 RMSDLIYRPEEEVVAELEKFKSHVMTCASK 506
>ref|NP_565456.1| putative WD-40 repeat protein, MSI4; protein id: At2g19520.1,
supported by cDNA: gi_2599091 [Arabidopsis thaliana]
gi|20197482|gb|AAD10151.2| putative WD-40 repeat
protein, MSI4 [Arabidopsis thaliana]
Length = 457
Score = 160 bits (405), Expect = 1e-38
Identities = 75/90 (83%), Positives = 81/90 (89%), Gaps = 3/90 (3%)
Frame = -1
Query: 571 DRASRKS---INTPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIW 401
DR S+KS +P GLFFQHAGHRDKVVDFHWNA DPWTIVSVSDDCE+TGGGGTLQIW
Sbjct: 367 DRVSKKSDRAAKSPAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIW 426
Query: 400 RMSDLIYRPEEEVLAELEKFKAHVVACASK 311
RMSDLIYRPEEEV+AELEKFK+HV+ CASK
Sbjct: 427 RMSDLIYRPEEEVVAELEKFKSHVMTCASK 456
>gb|AAD03340.1| WD-40 repeat protein MSI4 [Arabidopsis thaliana]
Length = 457
Score = 158 bits (399), Expect = 5e-38
Identities = 74/90 (82%), Positives = 80/90 (88%), Gaps = 3/90 (3%)
Frame = -1
Query: 571 DRASRKS---INTPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIW 401
DR S+KS +P GLFFQHAGHRDKVVDFHWNA DPWTIVSVSDDCE+TGGGGTLQIW
Sbjct: 367 DRVSKKSDRAAKSPAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIW 426
Query: 400 RMSDLIYRPEEEVLAELEKFKAHVVACASK 311
RMSDLIYRPEEEV+AEL KFK+HV+ CASK
Sbjct: 427 RMSDLIYRPEEEVVAELAKFKSHVMTCASK 456
>gb|AAF97517.1|AF250047_1 WD-repeat protein RBAP1 [Zea mays]
Length = 453
Score = 152 bits (383), Expect = 4e-36
Identities = 68/84 (80%), Positives = 76/84 (89%)
Frame = -1
Query: 559 RKSINTPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIY 380
+K+ N P GLFFQHAGHRDK+VDFHWN+ DPWTIVSVSDD ESTGGGGTLQIWRMSDLIY
Sbjct: 370 KKNSNVPAGLFFQHAGHRDKIVDFHWNSSDPWTIVSVSDDGESTGGGGTLQIWRMSDLIY 429
Query: 379 RPEEEVLAELEKFKAHVVACASKS 308
RPE+EVLAELE FKAH+ +CA K+
Sbjct: 430 RPEDEVLAELENFKAHLASCAPKN 453
>gb|AAK67147.1|AF384037_1 nucleosome/chromatin assembly factor C [Zea mays]
Length = 453
Score = 152 bits (383), Expect = 4e-36
Identities = 68/84 (80%), Positives = 76/84 (89%)
Frame = -1
Query: 559 RKSINTPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIY 380
+K+ N P GLFFQHAGHRDK+VDFHWN+ DPWTIVSVSDD ESTGGGGTLQIWRMSDLIY
Sbjct: 370 KKNSNVPAGLFFQHAGHRDKIVDFHWNSSDPWTIVSVSDDGESTGGGGTLQIWRMSDLIY 429
Query: 379 RPEEEVLAELEKFKAHVVACASKS 308
RPE+EVLAELE FKAH+ +CA K+
Sbjct: 430 RPEDEVLAELENFKAHLASCAPKN 453
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,657,259
Number of Sequences: 1393205
Number of extensions: 11713083
Number of successful extensions: 28653
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 27285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28603
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
