Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017244A_C01 KMC017244A_c01
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S35701 translation elongation factor EF-G, chloroplast - so... 259 3e-68
sp|P34811|EFGC_SOYBN ELONGATION FACTOR G, CHLOROPLAST PRECURSOR ... 254 6e-67
ref|NP_564801.1| elongation factor Tu family protein; protein id... 222 3e-57
gb|AAK64040.1| unknown protein [Arabidopsis thaliana] 222 3e-57
sp|P35450|EFGC_PEA ELONGATION FACTOR G, CHLOROPLAST (EF-G) gi|55... 174 1e-42
>pir||S35701 translation elongation factor EF-G, chloroplast - soybean
Length = 787
Score = 259 bits (661), Expect = 3e-68
Identities = 138/177 (77%), Positives = 151/177 (84%), Gaps = 9/177 (5%)
Frame = +1
Query: 121 MAAES-LRVATSSLCNLNGSQRRPTP--LSPVRFVGMEKGFRPRPS-RSFASSSLSQFFG 288
MAAES LRVAT +LCNLNGSQRRPT LSP+RF+G FRPRPS S SSSLS FFG
Sbjct: 1 MAAESSLRVATPTLCNLNGSQRRPTTTTLSPLRFMG----FRPRPSSHSLTSSSLSHFFG 56
Query: 289 RARINSNSFTS-----PKNGPRRSFSVFAMATDDTKRAIPLKDYRNIGIMAHIDAGKTTT 453
RI+SNS +S ++ PRR+FSVFAM+ DD KR++PLKDYRNIGIMAHIDAGKTTT
Sbjct: 57 STRIHSNSSSSYSSISRQHAPRRNFSVFAMSADDAKRSVPLKDYRNIGIMAHIDAGKTTT 116
Query: 454 TERILFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRIHIIDTP 624
TERIL+YTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRI+IIDTP
Sbjct: 117 TERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTP 173
>sp|P34811|EFGC_SOYBN ELONGATION FACTOR G, CHLOROPLAST PRECURSOR (EF-G)
Length = 788
Score = 254 bits (649), Expect = 6e-67
Identities = 138/178 (77%), Positives = 151/178 (84%), Gaps = 10/178 (5%)
Frame = +1
Query: 121 MAAES-LRVATSSLCNLNGSQRRPTP--LSPVRFVGMEKGFRPRPS-RSFASSSLSQFFG 288
MAAES LRVAT +LCNLNGSQRRPT LSP+RF+G FRPRPS S SSSLS FFG
Sbjct: 1 MAAESSLRVATPTLCNLNGSQRRPTTTTLSPLRFMG----FRPRPSSHSLTSSSLSHFFG 56
Query: 289 RARINSNSFTS-----PKNGPRRSFSVFAMATD-DTKRAIPLKDYRNIGIMAHIDAGKTT 450
RI+SNS +S ++ PRR+FSVFAM+ D D KR++PLKDYRNIGIMAHIDAGKTT
Sbjct: 57 STRIHSNSSSSYSSISRQHAPRRNFSVFAMSADGDAKRSVPLKDYRNIGIMAHIDAGKTT 116
Query: 451 TTERILFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRIHIIDTP 624
TTERIL+YTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRI+IIDTP
Sbjct: 117 TTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTP 174
>ref|NP_564801.1| elongation factor Tu family protein; protein id: At1g62750.1
[Arabidopsis thaliana] gi|25299484|pir||E96652 protein
F23N19.11 [imported] - Arabidopsis thaliana
gi|6630460|gb|AAF19548.1|AC007190_16 F23N19.11
[Arabidopsis thaliana] gi|23297147|gb|AAN13104.1|
unknown protein [Arabidopsis thaliana]
Length = 783
Score = 222 bits (566), Expect = 3e-57
Identities = 118/172 (68%), Positives = 135/172 (77%), Gaps = 4/172 (2%)
Frame = +1
Query: 121 MAAESLRVATSS----LCNLNGSQRRPTPLSPVRFVGMEKGFRPRPSRSFASSSLSQFFG 288
MAA++LR+++SS +CNLNGSQRRP L P+ G PR S S SSS+ QF G
Sbjct: 1 MAADALRISSSSSGSLVCNLNGSQRRPV-LLPLSHRATFLGLPPRASSSSISSSIPQFLG 59
Query: 289 RARINSNSFTSPKNGPRRSFSVFAMATDDTKRAIPLKDYRNIGIMAHIDAGKTTTTERIL 468
+RI S S + ++ FSVFA A + KRA+PLKDYRNIGIMAHIDAGKTTTTERIL
Sbjct: 60 TSRIGLGS--SKLSQKKKQFSVFAAAEAEAKRAVPLKDYRNIGIMAHIDAGKTTTTERIL 117
Query: 469 FYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRIHIIDTP 624
+YTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFW+KHRI+IIDTP
Sbjct: 118 YYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWDKHRINIIDTP 169
>gb|AAK64040.1| unknown protein [Arabidopsis thaliana]
Length = 783
Score = 222 bits (566), Expect = 3e-57
Identities = 118/172 (68%), Positives = 135/172 (77%), Gaps = 4/172 (2%)
Frame = +1
Query: 121 MAAESLRVATSS----LCNLNGSQRRPTPLSPVRFVGMEKGFRPRPSRSFASSSLSQFFG 288
MAA++LR+++SS +CNLNGSQRRP L P+ G PR S S SSS+ QF G
Sbjct: 1 MAADALRISSSSSGSLVCNLNGSQRRPV-LLPLSHRATFLGLPPRASSSSISSSIPQFLG 59
Query: 289 RARINSNSFTSPKNGPRRSFSVFAMATDDTKRAIPLKDYRNIGIMAHIDAGKTTTTERIL 468
+RI S S + ++ FSVFA A + KRA+PLKDYRNIGIMAHIDAGKTTTTERIL
Sbjct: 60 TSRIGLGS--SKLSQKKKQFSVFAAAEAEAKRAVPLKDYRNIGIMAHIDAGKTTTTERIL 117
Query: 469 FYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRIHIIDTP 624
+YTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFW+KHRI+IIDTP
Sbjct: 118 YYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWDKHRINIIDTP 169
>sp|P35450|EFGC_PEA ELONGATION FACTOR G, CHLOROPLAST (EF-G) gi|553080|gb|AAA33654.1|
chloroplast EF-G
Length = 141
Score = 174 bits (440), Expect = 1e-42
Identities = 82/87 (94%), Positives = 86/87 (98%)
Frame = +1
Query: 364 ATDDTKRAIPLKDYRNIGIMAHIDAGKTTTTERILFYTGRNYKIGEVHEGTATMDWMEQE 543
AT+D KRA+PLKDYRNIGIMAHIDAGKTTTTERILFYTGRNYKIGEVHEGTATMDWMEQE
Sbjct: 1 ATEDGKRAVPLKDYRNIGIMAHIDAGKTTTTERILFYTGRNYKIGEVHEGTATMDWMEQE 60
Query: 544 QERGITITSAATTTFWNKHRIHIIDTP 624
QERGITITSAATTTFW+KHRI+IIDTP
Sbjct: 61 QERGITITSAATTTFWDKHRINIIDTP 87
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 575,373,563
Number of Sequences: 1393205
Number of extensions: 13218883
Number of successful extensions: 62624
Number of sequences better than 10.0: 1700
Number of HSP's better than 10.0 without gapping: 52922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60540
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
