Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017242A_C01 KMC017242A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565744.1| putative ligand-gated ion channel subunit; prot... 84 2e-15
pir||F84732 probable ligand-gated ion channel subunit [imported]... 84 2e-15
pir||T51136 ionotropic glutamate receptor glr5 [imported] - Arab... 83 3e-15
dbj|BAC57657.1| putative ionotropic glutamate receptor homolog G... 67 2e-10
pir||T51131 ligand gated channel-like protein [imported] - rape ... 65 1e-09
>ref|NP_565744.1| putative ligand-gated ion channel subunit; protein id: At2g32400.1,
supported by cDNA: gi_6644387 [Arabidopsis thaliana]
gi|20197428|gb|AAC69938.2| putative ligand-gated ion
channel subunit [Arabidopsis thaliana]
Length = 921
Score = 84.0 bits (206), Expect = 2e-15
Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -1
Query: 665 TENGELRKIHEKWFCKMGCPEERKSHPKVEPLYLTSFWGLYLSCAVVSLAALLIFLLRMI 486
+E +L++I +KW CK C + +P+ L+L SF GLYL C ++++A L+F+LRMI
Sbjct: 787 SETRKLQEIRKKWLCKTNCAGKSNWNPEPNQLHLKSFKGLYLVCIAITVSAFLVFVLRMI 846
Query: 485 CPYGRFK--PKPKDIIVSSSSEPSSSHCSQVVGNFFNFIDKKEEAIKKMFAQCDNSHS 318
+ R++ + + +S S + ++V +F F+D+KEEAIK+MF + D+S++
Sbjct: 847 RQFVRYRRMERTSSMPRASWSASPTLRLRELVFDFVEFVDEKEEAIKRMFRRSDDSNN 904
>pir||F84732 probable ligand-gated ion channel subunit [imported] - Arabidopsis
thaliana
Length = 923
Score = 84.0 bits (206), Expect = 2e-15
Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -1
Query: 665 TENGELRKIHEKWFCKMGCPEERKSHPKVEPLYLTSFWGLYLSCAVVSLAALLIFLLRMI 486
+E +L++I +KW CK C + +P+ L+L SF GLYL C ++++A L+F+LRMI
Sbjct: 789 SETRKLQEIRKKWLCKTNCAGKSNWNPEPNQLHLKSFKGLYLVCIAITVSAFLVFVLRMI 848
Query: 485 CPYGRFK--PKPKDIIVSSSSEPSSSHCSQVVGNFFNFIDKKEEAIKKMFAQCDNSHS 318
+ R++ + + +S S + ++V +F F+D+KEEAIK+MF + D+S++
Sbjct: 849 RQFVRYRRMERTSSMPRASWSASPTLRLRELVFDFVEFVDEKEEAIKRMFRRSDDSNN 906
>pir||T51136 ionotropic glutamate receptor glr5 [imported] - Arabidopsis thaliana
gi|6644388|gb|AAF21042.1|AF210701_1 Glr5 [Arabidopsis
thaliana]
Length = 921
Score = 83.2 bits (204), Expect = 3e-15
Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -1
Query: 665 TENGELRKIHEKWFCKMGCPEERKSHPKVEPLYLTSFWGLYLSCAVVSLAALLIFLLRMI 486
+E +L++I +KW CK C + +P+ L+L SF GLYL C ++++A L+F+LRMI
Sbjct: 787 SETRKLQEIRKKWLCKTNCAGKSNWNPEPNQLHLKSFKGLYLVCIAITVSAFLVFVLRMI 846
Query: 485 CPYGRFK--PKPKDIIVSSSSEPSSSHCSQVVGNFFNFIDKKEEAIKKMFAQCDNSHS 318
+ R++ + + +S S + ++V +F F+D+KEEAIK+MF + D+S++
Sbjct: 847 RQFVRYRRMERISSMPRASWSASPTLRLRELVFDFVEFVDEKEEAIKRMFRRSDDSNN 904
>dbj|BAC57657.1| putative ionotropic glutamate receptor homolog GLR4 [Oryza sativa
(japonica cultivar-group)]
Length = 929
Score = 67.0 bits (162), Expect = 2e-10
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 5/118 (4%)
Frame = -1
Query: 665 TENGELRKIHEKWFCKMGCPEERKSHPKVEPLYLTSFWGLYLSCAVVSLAALLIFLLRMI 486
+ENG L++IH++W C + + L L+SFWGLYL C + ALLIF LR+
Sbjct: 801 SENGNLQRIHDEWLTGTECSAD-DNEVGSNRLSLSSFWGLYLICGFSCVLALLIFFLRIC 859
Query: 485 CPYGRFK-----PKPKDIIVSSSSEPSSSHCSQVVGNFFNFIDKKEEAIKKMFAQCDN 327
C Y ++ P+ IV+ S+ ++ + + +F+DK+EE +K + N
Sbjct: 860 CQYSKYNNQVGLDSPEPEIVTRSARLTT------IKSIISFVDKREEEVKNALKKKPN 911
>pir||T51131 ligand gated channel-like protein [imported] - rape
gi|6650552|gb|AAF21901.1|AF109392_1 ligand gated
channel-like protein [Brassica napus]
Length = 912
Score = 64.7 bits (156), Expect = 1e-09
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Frame = -1
Query: 665 TENGELRKIHEKWFCKMGCPEERKSHP-KVEPLYLTSFWGLYLSCAVVSLAALLIFLLRM 489
+E GEL++IH++W K C S E L + SFWG++L C + AL I +++
Sbjct: 788 SETGELQRIHDRWLSKSNCSSPHGSQSGDSEQLNVHSFWGMFLVCGIACFVALFIHFVKV 847
Query: 488 ICPYGRFKPKPKDIIVSSSSEPSSSHCSQVVGNFFNFIDKKEEAIKKMFAQCDNSHS 318
+ + + KP+ ++ + S P SS + + F +ID+KEE K+ F + +S S
Sbjct: 848 VRNFIKHKPEEEEKDIPS---PESSRLKK-LQTFLAYIDEKEEESKRRFKRKRSSLS 900
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,349,480
Number of Sequences: 1393205
Number of extensions: 11930071
Number of successful extensions: 28949
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 28054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28919
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
