Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017237A_C01 KMC017237A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC14868.1| DNA Helicase [Arabidopsis thaliana] 61 1e-08
gb|AAM53319.1| DNA helicase isolog [Arabidopsis thaliana] 61 1e-08
emb|CAD40912.1| OSJNBa0088K19.3 [Oryza sativa (japonica cultivar... 60 2e-08
emb|CAC14869.1| DNA Helicase [Arabidopsis thaliana] 40 0.022
ref|NP_176289.1| putative DNA helicase; protein id: At1g60930.1 ... 40 0.022
>emb|CAC14868.1| DNA Helicase [Arabidopsis thaliana]
Length = 1182
Score = 60.8 bits (146), Expect = 1e-08
Identities = 49/120 (40%), Positives = 60/120 (49%), Gaps = 6/120 (5%)
Frame = -2
Query: 588 YGDRLLETIEDTINEYYKLDKSSS-GSKGSADSAKRRREAASGDASANAEDDFTKSTGRS 412
YGD+LLETIE T+NEYY +K S S S DS KRRR+ A +DDF S +S
Sbjct: 1076 YGDQLLETIETTVNEYYGTNKKDSIISNDSPDSGKRRRDENISPNVAE-DDDFEVSPSQS 1134
Query: 411 KKMTVKRQTKRTEIYDSEEEDYYHGCLD-----EELDFDNLENEALNKTPCTNAGGRVLP 247
K TV+ K E+ E C+D ELDFD + + P GRVLP
Sbjct: 1135 CKKTVR--NKSNEVLHGE-------CIDGDRRGMELDFDFKDEDGSEIRP----EGRVLP 1181
>gb|AAM53319.1| DNA helicase isolog [Arabidopsis thaliana]
Length = 1188
Score = 60.8 bits (146), Expect = 1e-08
Identities = 49/120 (40%), Positives = 60/120 (49%), Gaps = 6/120 (5%)
Frame = -2
Query: 588 YGDRLLETIEDTINEYYKLDKSSS-GSKGSADSAKRRREAASGDASANAEDDFTKSTGRS 412
YGD+LLETIE T+NEYY +K S S S DS KRRR+ A +DDF S +S
Sbjct: 1082 YGDQLLETIETTVNEYYGTNKKDSIISNDSPDSGKRRRDENISPNVAE-DDDFEVSPSQS 1140
Query: 411 KKMTVKRQTKRTEIYDSEEEDYYHGCLD-----EELDFDNLENEALNKTPCTNAGGRVLP 247
K TV+ K E+ E C+D ELDFD + + P GRVLP
Sbjct: 1141 CKKTVR--NKSNEVLHGE-------CIDGDRRGMELDFDFKDEDGSEIRP----EGRVLP 1187
>emb|CAD40912.1| OSJNBa0088K19.3 [Oryza sativa (japonica cultivar-group)]
Length = 1080
Score = 60.1 bits (144), Expect = 2e-08
Identities = 45/118 (38%), Positives = 59/118 (49%), Gaps = 2/118 (1%)
Frame = -2
Query: 588 YGDRLLETIEDTINEYYKLDK--SSSGSKGSADSAKRRREAASGDASANAEDDFTKSTGR 415
YGDR+L TIED + Y + SS GS +++ K+RR + + S N DDF + T +
Sbjct: 959 YGDRVLATIEDFLARYPNATRKTSSGGSNEHSEAVKKRRGFSVTNTSTNC-DDFEERTVQ 1017
Query: 414 SKKMTVKRQTKRTEIYDSEEEDYYHGCLDEELDFDNLENEALNKTPCTNAGGRVLPQW 241
SKK K +T R EI D+ +D ELD NE A GRVLP W
Sbjct: 1018 SKKRAAKTRT-RQEISDAASIVQDVRYIDLELDGCEQVNEVPYSVQKPVASGRVLPAW 1074
>emb|CAC14869.1| DNA Helicase [Arabidopsis thaliana]
Length = 1150
Score = 40.0 bits (92), Expect = 0.022
Identities = 26/67 (38%), Positives = 36/67 (52%)
Frame = -2
Query: 588 YGDRLLETIEDTINEYYKLDKSSSGSKGSADSAKRRREAASGDASANAEDDFTKSTGRSK 409
YGDRLLETI+ TIN++YK S KRRR+ + + + +DD S +S
Sbjct: 1093 YGDRLLETIDSTINDHYKT---------RPGSGKRRRD-ENVNPNVAEDDDPDWSASQSH 1142
Query: 408 KMTVKRQ 388
K VK +
Sbjct: 1143 KKVVKNK 1149
>ref|NP_176289.1| putative DNA helicase; protein id: At1g60930.1 [Arabidopsis thaliana]
gi|25404300|pir||G96634 probable DNA helicase T7P1.7
[imported] - Arabidopsis thaliana
gi|12323338|gb|AAG51646.1|AC018908_12 putative DNA
helicase; 33057-26178 [Arabidopsis thaliana]
Length = 1031
Score = 40.0 bits (92), Expect = 0.022
Identities = 26/67 (38%), Positives = 36/67 (52%)
Frame = -2
Query: 588 YGDRLLETIEDTINEYYKLDKSSSGSKGSADSAKRRREAASGDASANAEDDFTKSTGRSK 409
YGDRLLETI+ TIN++YK S KRRR+ + + + +DD S +S
Sbjct: 974 YGDRLLETIDSTINDHYKT---------RPGSGKRRRD-ENVNPNVAEDDDPDWSASQSH 1023
Query: 408 KMTVKRQ 388
K VK +
Sbjct: 1024 KKVVKNK 1030
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,720,668
Number of Sequences: 1393205
Number of extensions: 9689414
Number of successful extensions: 31771
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 29945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31573
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
