Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017236A_C01 KMC017236A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO26691.1|AF478379_1 gag-pol polyprotein [Vitis vinifera] 65 5e-10
gb|AAO26694.1|AF478385_1 gag-pol polyprotein [Vitis vinifera] 34 1.6
gb|AAO26693.1|AF478384_1 gag-pol polyprotein [Vitis vinifera] 34 1.6
gb|AAO26692.1|AF478383_1 gag-pol polyprotein [Vitis vinifera] 34 1.6
gb|AAG23413.1|AF208401_1 POP1D protein [Gallus gallus] 32 6.2
>gb|AAO26691.1|AF478379_1 gag-pol polyprotein [Vitis vinifera]
Length = 450
Score = 65.5 bits (158), Expect = 5e-10
Identities = 33/66 (50%), Positives = 46/66 (69%)
Frame = -3
Query: 257 FYCTPKQERSLAAYSIDF*RVYEELNELLPRNSDVKVPNAKHEKMAIMSFLYVLPPKFEV 78
F+ K +SL AY +DF +VYEELN L+P + DV+V A+ E+MA++SFL LP +FE
Sbjct: 38 FHRPEKGAKSLTAYFMDFKKVYEELNALMPFSPDVRVQQAQREQMAVVSFLSGLPSEFET 97
Query: 77 IRSHIL 60
+S IL
Sbjct: 98 TKSQIL 103
>gb|AAO26694.1|AF478385_1 gag-pol polyprotein [Vitis vinifera]
Length = 110
Score = 33.9 bits (76), Expect = 1.6
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2
Query: 375 HTKQAWSRDDVNLFLHIRNSINT 307
HT++ W +DD LFL ++NSIN+
Sbjct: 56 HTRKLWMQDDARLFLQMKNSINS 78
>gb|AAO26693.1|AF478384_1 gag-pol polyprotein [Vitis vinifera]
Length = 120
Score = 33.9 bits (76), Expect = 1.6
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2
Query: 375 HTKQAWSRDDVNLFLHIRNSINT 307
HT++ W +DD LFL ++NSIN+
Sbjct: 56 HTRKLWMQDDARLFLQMKNSINS 78
>gb|AAO26692.1|AF478383_1 gag-pol polyprotein [Vitis vinifera]
Length = 120
Score = 33.9 bits (76), Expect = 1.6
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2
Query: 375 HTKQAWSRDDVNLFLHIRNSINT 307
HT++ W +DD LFL ++NSIN+
Sbjct: 56 HTRKLWMQDDARLFLQMKNSINS 78
>gb|AAG23413.1|AF208401_1 POP1D protein [Gallus gallus]
Length = 693
Score = 32.0 bits (71), Expect = 6.2
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -3
Query: 584 WSFLKGSTIFLPMLFQSFKASTIPLSRMKYRSQ*SSFQKHFNDLYSSLWLPLYLVANVMM 405
W+F+ + F+ ++ +++ ++ SF K F +LYS+L+ PL + V
Sbjct: 80 WNFILFAICFVQFIYVTYQVRSV------------SFDKEFQELYSALFQPLGISLTVYR 127
Query: 404 KII 396
KI+
Sbjct: 128 KIV 130
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,387,740
Number of Sequences: 1393205
Number of extensions: 9682762
Number of successful extensions: 19466
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19439
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
