Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017235A_C01 KMC017235A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09572 cdc2-like protein kinase cdc2MsC - alfalfa gi|180614... 134 6e-31
emb|CAC51391.1| cyclin dependent kinase C [Lycopersicon esculentum] 111 8e-24
gb|AAL32527.1| cdc2-like protein kinase [Arabidopsis thaliana] g... 106 2e-22
ref|NP_201301.1| Cyclin-dependent kinase C;2; protein id: At5g64... 106 2e-22
ref|NP_196589.1| Cyclin-dependent kinase C;1; protein id: At5g10... 87 2e-16
>pir||T09572 cdc2-like protein kinase cdc2MsC - alfalfa
gi|1806140|emb|CAA65979.1| cdc2MsC [Medicago sativa]
Length = 509
Score = 134 bits (338), Expect = 6e-31
Identities = 68/85 (80%), Positives = 68/85 (80%), Gaps = 4/85 (4%)
Frame = -2
Query: 583 HPNRGXQGGG-GYGSGPYPPQGRGAPYGSSGMP---GGGPRGGGGGYGAGAPNYPQQGGP 416
HPNRG QGGG GYGSGPYPPQGRGAPYGSSGMP GGGPRGGG G GAPNYPQ G P
Sbjct: 434 HPNRGGQGGGAGYGSGPYPPQGRGAPYGSSGMPAGTGGGPRGGG---GFGAPNYPQGGPP 490
Query: 415 YGGSAAGRGSNMMGGNRNQQYGWQQ 341
YGGSAAGR GNRNQQYGWQQ
Sbjct: 491 YGGSAAGR------GNRNQQYGWQQ 509
>emb|CAC51391.1| cyclin dependent kinase C [Lycopersicon esculentum]
Length = 512
Score = 111 bits (277), Expect = 8e-24
Identities = 54/81 (66%), Positives = 58/81 (70%)
Frame = -2
Query: 583 HPNRGXQGGGGYGSGPYPPQGRGAPYGSSGMPGGGPRGGGGGYGAGAPNYPQQGGPYGGS 404
+ +RG QGGG Y SG YPPQGR P+ SG+ GPRG GGYG G PNY Q G YGGS
Sbjct: 435 YQDRGAQGGG-YSSGAYPPQGRAPPFPGSGLAPSGPRGPSGGYG-GPPNY-SQSGQYGGS 491
Query: 403 AAGRGSNMMGGNRNQQYGWQQ 341
AGRGSN M GNRNQQYGWQQ
Sbjct: 492 GAGRGSNQMSGNRNQQYGWQQ 512
>gb|AAL32527.1| cdc2-like protein kinase [Arabidopsis thaliana]
gi|27311919|gb|AAO00925.1| cdc2-like protein kinase
[Arabidopsis thaliana]
Length = 513
Score = 106 bits (265), Expect = 2e-22
Identities = 51/75 (68%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Frame = -2
Query: 565 QGGGGYGSGPYPPQGRGAPYGSSGMPGGGPRGGGGGYGAGAPNYPQQGGPYGGS-AAGRG 389
Q GGY SG YPPQGRGAPYG+ GPRG GGYG G PNY Q GG YGGS +GRG
Sbjct: 444 QSRGGYSSGAYPPQGRGAPYGA------GPRGPSGGYGVGPPNYSQGGGQYGGSGGSGRG 497
Query: 388 SNMMGGNRNQQYGWQ 344
N MGG RNQQYGWQ
Sbjct: 498 QNPMGGARNQQYGWQ 512
>ref|NP_201301.1| Cyclin-dependent kinase C;2; protein id: At5g64960.1, supported by
cDNA: gi_13430443, supported by cDNA: gi_17064745
[Arabidopsis thaliana] gi|8843760|dbj|BAA97308.1|
cdc2-like protein kinase [Arabidopsis thaliana]
gi|13430444|gb|AAK25844.1|AF360134_1 putative cdc2
protein kinase [Arabidopsis thaliana]
gi|14532732|gb|AAK64067.1| putative cdc2 protein kinase
[Arabidopsis thaliana]
Length = 513
Score = 106 bits (265), Expect = 2e-22
Identities = 51/75 (68%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Frame = -2
Query: 565 QGGGGYGSGPYPPQGRGAPYGSSGMPGGGPRGGGGGYGAGAPNYPQQGGPYGGS-AAGRG 389
Q GGY SG YPPQGRGAPYG+ GPRG GGYG G PNY Q GG YGGS +GRG
Sbjct: 444 QSRGGYSSGAYPPQGRGAPYGA------GPRGPSGGYGVGPPNYSQGGGQYGGSGGSGRG 497
Query: 388 SNMMGGNRNQQYGWQ 344
N MGG RNQQYGWQ
Sbjct: 498 QNPMGGARNQQYGWQ 512
>ref|NP_196589.1| Cyclin-dependent kinase C;1; protein id: At5g10270.1, supported by
cDNA: gi_14030692 [Arabidopsis thaliana]
gi|11346412|pir||T50815 cdc2-like protein kinase -
Arabidopsis thaliana gi|8953408|emb|CAB96683.1|
cdc2-like protein kinase [Arabidopsis thaliana]
gi|14030693|gb|AAK53021.1|AF375437_1 AT5g10270/F18D22_40
[Arabidopsis thaliana] gi|21464557|gb|AAM52233.1|
AT5g10270/F18D22_40 [Arabidopsis thaliana]
Length = 505
Score = 87.0 bits (214), Expect = 2e-16
Identities = 51/89 (57%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Frame = -2
Query: 583 HPNRGXQGGG------GYGSGPYPPQGRGAPYGSSGMPGGGPRG-GGGGYGAGAPNYPQQ 425
+P G Q GG GY SG YPPQGRGAPY + GPRG GG YG G PNY Q
Sbjct: 428 YPPSGNQSGGYNQSRGGYSSGSYPPQGRGAPYVA------GPRGPSGGPYGVGPPNY-TQ 480
Query: 424 GGPYGGS-AAGRGSNMMGGNRNQQYGWQQ 341
GG YGGS ++GRG N RNQQYGWQQ
Sbjct: 481 GGQYGGSGSSGRGQN----QRNQQYGWQQ 505
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,908,680
Number of Sequences: 1393205
Number of extensions: 18038066
Number of successful extensions: 306055
Number of sequences better than 10.0: 6941
Number of HSP's better than 10.0 without gapping: 77470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179442
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
