Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017233A_C01 KMC017233A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180187.1| putative SF16 protein {Helianthus annuus}; prot... 51 1e-05
pir||T02606 hypothetical protein T19L18.1 - Arabidopsis thaliana... 51 1e-05
ref|NP_177411.1| hypothetical protein; protein id: At1g72670.1 [... 42 0.006
dbj|BAB12717.1| P0671B11.33 [Oryza sativa (japonica cultivar-gro... 38 0.11
sp|P87179|YB1E_SCHPO Protein C30B4.01c in chromosome II gi|74915... 37 0.18
>ref|NP_180187.1| putative SF16 protein {Helianthus annuus}; protein id: At2g26180.1
[Arabidopsis thaliana] gi|25367166|pir||D84657 probable
SF16 protein (Helianthus annuus) [imported] -
Arabidopsis thaliana gi|3075399|gb|AAC14531.1| putative
SF16 protein {Helianthus annuus} [Arabidopsis thaliana]
Length = 416
Score = 50.8 bits (120), Expect = 1e-05
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Frame = -3
Query: 586 SSTISSEYDDSPAVSTTCTSASLPSTNTAMVE--ATEERDVHQPSYMNWTQSTKAKLKCS 413
SS+ E+++S S+ CTS + S T +V ++ + H+PSYM+ T+STKAK +
Sbjct: 307 SSSPGYEFNESSGSSSICTSTTPVSGKTGLVSDNSSSQAKKHKPSYMSLTESTKAKRR-- 364
Query: 412 SQNSKKLGMEDCLSHSTTTVTNGDNRSSSGSDPSVNLWKDLCSTPLRARYPK 257
+ + M++ + + G+ ++S SDP V+ K L P R P+
Sbjct: 365 TNRGLRQSMDEFQFMKNSGMFTGELKTSPSSDPFVSFSKPL-GVPTRFEKPR 415
>pir||T02606 hypothetical protein T19L18.1 - Arabidopsis thaliana (fragment)
Length = 303
Score = 50.8 bits (120), Expect = 1e-05
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Frame = -3
Query: 586 SSTISSEYDDSPAVSTTCTSASLPSTNTAMVE--ATEERDVHQPSYMNWTQSTKAKLKCS 413
SS+ E+++S S+ CTS + S T +V ++ + H+PSYM+ T+STKAK +
Sbjct: 194 SSSPGYEFNESSGSSSICTSTTPVSGKTGLVSDNSSSQAKKHKPSYMSLTESTKAKRR-- 251
Query: 412 SQNSKKLGMEDCLSHSTTTVTNGDNRSSSGSDPSVNLWKDLCSTPLRARYPK 257
+ + M++ + + G+ ++S SDP V+ K L P R P+
Sbjct: 252 TNRGLRQSMDEFQFMKNSGMFTGELKTSPSSDPFVSFSKPL-GVPTRFEKPR 302
>ref|NP_177411.1| hypothetical protein; protein id: At1g72670.1 [Arabidopsis
thaliana] gi|25406199|pir||D96751 hypothetical protein
F28P22.14 [imported] - Arabidopsis thaliana
gi|12323773|gb|AAG51853.1|AC010926_16 hypothetical
protein; 51860-53619 [Arabidopsis thaliana]
Length = 414
Score = 42.0 bits (97), Expect = 0.006
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Frame = -3
Query: 553 PAVSTTCTSASLPSTNTAMVEAT-----EERDVHQPSYMNWTQSTKAKLKCSSQNS--KK 395
P +S++ TS+ ST+ + V + E +PSYM+ TQS KAK + S +S K
Sbjct: 304 PPMSSSATSSESSSTSQSPVPFSGSFLEEGGYYRKPSYMSLTQSIKAKQRRSGSSSSCSK 363
Query: 394 LGMEDCLSHSTTTVTNGD--NRSSSGSDPSVNLWKDL 290
E S S NGD R S+GSDP N W DL
Sbjct: 364 TPFEKKQSMS----YNGDVNVRRSAGSDPLNNQWTDL 396
>dbj|BAB12717.1| P0671B11.33 [Oryza sativa (japonica cultivar-group)]
gi|10934080|dbj|BAB16858.1| P0001B06.11 [Oryza sativa
(japonica cultivar-group)]
Length = 442
Score = 37.7 bits (86), Expect = 0.11
Identities = 25/65 (38%), Positives = 43/65 (65%), Gaps = 4/65 (6%)
Frame = -3
Query: 583 STISSEY--DDSPAVSTTCTSASLPSTNTAMV-EATEERDVHQPSYMNWTQSTKAKLK-C 416
S++S+E D+S A S++C +++ S +T + E TE+ +P+YMN T+S KAK K C
Sbjct: 357 SSLSTELHNDESSASSSSCFASTPISFSTFVTTEKTEDSIRARPNYMNMTESIKAKRKAC 416
Query: 415 SSQNS 401
++Q +
Sbjct: 417 NAQRT 421
>sp|P87179|YB1E_SCHPO Protein C30B4.01c in chromosome II gi|7491580|pir||T40167
hypothetical protein SPBC30B4.01c - fission yeast
(Schizosaccharomyces pombe) (fragment)
gi|3417427|emb|CAA20314.1| putative glucoamylase
[Schizosaccharomyces pombe]
Length = 344
Score = 37.0 bits (84), Expect = 0.18
Identities = 24/92 (26%), Positives = 42/92 (45%)
Frame = -3
Query: 586 SSTISSEYDDSPAVSTTCTSASLPSTNTAMVEATEERDVHQPSYMNWTQSTKAKLKCSSQ 407
SST SS SP+ S+T T+ S S++++ ++ S + + S+ + SS
Sbjct: 103 SSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 162
Query: 406 NSKKLGMEDCLSHSTTTVTNGDNRSSSGSDPS 311
+S S S+ +T+ + S S S S
Sbjct: 163 SSSSSSSSSSSSSSSVPITSSTSSSHSSSSSS 194
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,273,938
Number of Sequences: 1393205
Number of extensions: 10180207
Number of successful extensions: 28382
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 27267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28339
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
