Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017228A_C01 KMC017228A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO51658.1| hypothetical protein [Dictyostelium discoideum] 33 2.1
gb|AAF67463.1| phosphoprotein [Newcastle disease virus] 33 2.8
sp|Q9NHP5|TF2D_DROVI Transcription initiation factor TFIID (TATA... 33 2.8
gb|AAC40458.1| glycoprotein precursor [Marburg virus] 32 4.7
ref|NP_651575.1| CG31057-PA [Drosophila melanogaster] gi|1591994... 32 6.2
>gb|AAO51658.1| hypothetical protein [Dictyostelium discoideum]
Length = 1492
Score = 33.5 bits (75), Expect = 2.1
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -2
Query: 597 PSNVQN-----PNTKNQAEKHNVPPTSSAPPKSSTENVSKPERSVGTSNPS 460
PS +Q+ P + + + N PPTS +PP S S P + GTS P+
Sbjct: 943 PSTIQDTISTSPPSTSTSPTSNSPPTSISPPPPSITTGSSPPSTAGTSPPN 993
>gb|AAF67463.1| phosphoprotein [Newcastle disease virus]
Length = 395
Score = 33.1 bits (74), Expect = 2.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 585 QNPNTKNQAEKHNVPPTSSA--PPKSSTENVSKPERSVGTSN 466
+ P+T QA H+ PP +SA PP +T+ V + G SN
Sbjct: 74 KQPSTPEQATPHDSPPATSADQPPAQATDEVVDTQLKTGASN 115
>sp|Q9NHP5|TF2D_DROVI Transcription initiation factor TFIID (TATA-box factor) (TATA
sequence-binding protein) (TBP)
gi|8050582|gb|AAF71711.1|AF220262_1 TATA box-binding
protein; TBP [Drosophila virilis]
Length = 349
Score = 33.1 bits (74), Expect = 2.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 597 PSNVQNPNTKNQAEKHNVPPTSSAPPKSSTENVSKPERSVGTSNP 463
P ++ P T H +P TS+APP +S N+ +++G S P
Sbjct: 117 PQSLMQPQTPQSMMSHMMPMTSAAPPDASLSNI---HQTMGPSTP 158
>gb|AAC40458.1| glycoprotein precursor [Marburg virus]
Length = 681
Score = 32.3 bits (72), Expect = 4.7
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 3/49 (6%)
Frame = -2
Query: 597 PSNVQNPNTKN---QAEKHNVPPTSSAPPKSSTENVSKPERSVGTSNPS 460
P N NPNT++ + EK + PP ++ PP TEN + + + T +P+
Sbjct: 358 PQNTTNPNTQSMVTENEKTSAPPKATLPP---TENPTTEKSTNNTKSPT 403
>ref|NP_651575.1| CG31057-PA [Drosophila melanogaster] gi|15919949|gb|AAK54456.1|
microtubule-associated tau protein [Drosophila
melanogaster] gi|20976902|gb|AAM27526.1| RE16764p
[Drosophila melanogaster] gi|23172450|gb|AAF56732.2|
CG31057-PA [Drosophila melanogaster]
Length = 361
Score = 32.0 bits (71), Expect = 6.2
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -2
Query: 591 NVQNPNTKNQAEKHNVPPTSSAPPKSSTENVSKPERSVGTSNPSRVFGANSHVSSSWIPS 412
N + Q + N P + S+P K+ T SKP++S GTS P +N S S
Sbjct: 85 NDSGVDESTQEKDRNGPNSPSSPVKTPTSTSSKPDKS-GTSRPPSATPSNKSAPKSRSAS 143
Query: 411 LRRI 400
R+
Sbjct: 144 KNRL 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,143,710
Number of Sequences: 1393205
Number of extensions: 12492693
Number of successful extensions: 33906
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 31824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33682
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
