Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017204A_C01 KMC017204A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO00713.1| putative reverse transcriptase [Oryza sativa (jap... 158 6e-38
ref|NP_175227.1| reverse transcriptase, putative; protein id: At... 149 3e-35
ref|NP_192623.1| putative protein; protein id: At4g08830.1 [Arab... 147 1e-34
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ... 146 2e-34
ref|NP_182048.1| putative non-LTR retroelement reverse transcrip... 145 4e-34
>gb|AAO00713.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1557
Score = 158 bits (399), Expect = 6e-38
Identities = 82/201 (40%), Positives = 120/201 (58%)
Frame = +3
Query: 3 RIK*LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSS 182
R+ LK GD NT+FFH R N+I K++DA G + + + + A YF D++++
Sbjct: 729 RVNWLKEGDRNTKFFHNRVAWRAKKNKITKLRDAAGTFHRSKMVMEQMATQYFKDMFTAD 788
Query: 183 PLQYLRECLAPIPKLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNR 362
P I VT+ +N++LC++ S DEI A+F +G LKAPG DG FYQ+N
Sbjct: 789 PNLDHSPVTRLIQPKVTEEMNNRLCSEFSEDEIANALFQIGPLKAPGTDGFLARFYQRNW 848
Query: 363 EIVKNDVNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKI 542
+KND+ A+ +FF G + +N+T + LIPKI ++ FRPIS C+ IYKV+SK
Sbjct: 849 GCIKNDIVRAVKEFFHSGIMLEGVNDTAIVLIPKIEQPRDLRDFRPISLCNVIYKVLSKC 908
Query: 543 IVARLKPDMVNLISPMQSDFI 605
+V RL+P + LIS QS F+
Sbjct: 909 LVNRLRPFLDELISKNQSAFV 929
>ref|NP_175227.1| reverse transcriptase, putative; protein id: At1g47910.1
[Arabidopsis thaliana] gi|25405244|pir||E96519 probable
reverse transcriptase, 16838-20266 [imported] -
Arabidopsis thaliana
gi|12323627|gb|AAG51783.1|AC079679_3 reverse
transcriptase, putative; 16838-20266 [Arabidopsis
thaliana]
Length = 1142
Score = 149 bits (376), Expect = 3e-35
Identities = 79/197 (40%), Positives = 117/197 (59%)
Frame = +3
Query: 15 LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSSPLQY 194
+K GD+N++FFHA T QRR NRI + D +GIW + AV+YF ++++++ Q
Sbjct: 129 MKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYFQNLFTTANPQV 188
Query: 195 LRECLAPIPKLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVK 374
E L + L+TDR+N L A + E++ A+F + KAPG DG+ LF+Q++ I+K
Sbjct: 189 FDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTALFFQKSWAIIK 248
Query: 375 NDVNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVAR 554
+D+ + + F G LN T + LIPK + + RPIS C+ YKVISKI+ R
Sbjct: 249 SDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQR 308
Query: 555 LKPDMVNLISPMQSDFI 605
LK + NLIS QS F+
Sbjct: 309 LKTVLPNLISETQSAFV 325
>ref|NP_192623.1| putative protein; protein id: At4g08830.1 [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
gi|7267526|emb|CAB78008.1| putative protein [Arabidopsis
thaliana] gi|7321072|emb|CAB82119.1| putative protein
[Arabidopsis thaliana]
Length = 947
Score = 147 bits (371), Expect = 1e-34
Identities = 80/198 (40%), Positives = 117/198 (58%), Gaps = 4/198 (2%)
Frame = +3
Query: 24 GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSSPLQYLRE 203
GD NT +FH +TI RR NR+ ++ + G W+ K++ AV Y+ +YS + + +
Sbjct: 105 GDRNTNYFHTTTIIRRRQNRVERLHNEEGTWIFDAKELEALAVQYYQRLYS---MDDVLQ 161
Query: 204 CLAPIPKLVTDRLNHKLCAQVS----TDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIV 371
+ P+P+ +RL + ++ E++ A+ SMG KAPG DG +FYQ E+V
Sbjct: 162 VVNPLPQDGLERLTREEVLSLNKPFLATEVEVAIRSMGKYKAPGPDGYQPIFYQSCWEVV 221
Query: 372 KNDVNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVA 551
N V LDFF G LP + N+ LV LIPK+P E + QFRPIS C+ I+K+I+K++V
Sbjct: 222 GNSVIRFALDFFSSGILPPQTNDALVVLIPKVPKPERMNQFRPISLCNAIFKMITKMMVL 281
Query: 552 RLKPDMVNLISPMQSDFI 605
RLK + LI P QS FI
Sbjct: 282 RLKKVIGKLIGPSQSSFI 299
>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)]
Length = 1382
Score = 146 bits (368), Expect = 2e-34
Identities = 78/201 (38%), Positives = 118/201 (57%)
Frame = +3
Query: 3 RIK*LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSS 182
R+ L+ GD NT FFHA RR NRI ++ G Q+ + A ++ +++SS
Sbjct: 357 RVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSE 416
Query: 183 PLQYLRECLAPIPKLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNR 362
P + E L IP V D +N +L Q + +EIK A+F MG KAPG DG LFYQ +
Sbjct: 417 PCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHW 476
Query: 363 EIVKNDVNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKI 542
I++ + NA+ F E+P L +++V LIPK+ +A + +FRPIS C+ +YK+ SK+
Sbjct: 477 GILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKV 536
Query: 543 IVARLKPDMVNLISPMQSDFI 605
+ RLKP + +++S QS F+
Sbjct: 537 LANRLKPFLPDIVSEFQSAFV 557
>ref|NP_182048.1| putative non-LTR retroelement reverse transcriptase; protein id:
At2g45230.1 [Arabidopsis thaliana]
gi|25408936|pir||A84888 hypothetical protein At2g45230
[imported] - Arabidopsis thaliana
gi|2583130|gb|AAB82639.1| putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
Length = 1374
Score = 145 bits (366), Expect = 4e-34
Identities = 78/201 (38%), Positives = 118/201 (57%)
Frame = +3
Query: 3 RIK*LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSS 182
RI ++ GD NT++FHA+T RR NRI K+ D G + + A YF +++S
Sbjct: 341 RIMWMRNGDRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASE 400
Query: 183 PLQYLRECLAPIPKLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNR 362
+ Y E L + LV+D++N+ L A ++ +E++ A FS+ K PG DG+NG YQQ
Sbjct: 401 DVGYTVEELENLTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFW 460
Query: 363 EIVKNDVNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKI 542
E + + + + FF G + +N+T + LIPKI AE + FRPIS C+ IYKVI K+
Sbjct: 461 ETMGDQITEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKL 520
Query: 543 IVARLKPDMVNLISPMQSDFI 605
+ RLK + +LIS Q+ F+
Sbjct: 521 MANRLKKILPSLISETQAAFV 541
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,374,393
Number of Sequences: 1393205
Number of extensions: 10906625
Number of successful extensions: 26639
Number of sequences better than 10.0: 476
Number of HSP's better than 10.0 without gapping: 25698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26427
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
