Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017188A_C01 KMC017188A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF04410.1|AC010927_3 putative RecA protein [Arabidopsis thal... 69 5e-11
ref|NP_187625.2| putative RecA protein; protein id: At3g10140.1,... 69 5e-11
dbj|BAB86251.2| P0614D08.19 [Oryza sativa (japonica cultivar-gro... 65 5e-10
ref|NP_179539.1| putative recA protein; protein id: At2g19490.1 ... 44 0.001
dbj|BAB63856.2| hypothetical protein~similar to Arabidopsis RecA... 44 0.002
>gb|AAF04410.1|AC010927_3 putative RecA protein [Arabidopsis thaliana]
Length = 389
Score = 68.6 bits (166), Expect = 5e-11
Identities = 31/72 (43%), Positives = 46/72 (63%)
Frame = -2
Query: 497 KRLSLGIKFGRGFCHESEVFDLACDHGIIIKDEGSYLIEGETFSSREAAELFLAKNEGVC 318
K+ LGI FG GF E EV +LAC+HG+I+++ SY IEGE ++AAE +L +N+
Sbjct: 316 KKSELGIHFGHGFYVEREVLELACEHGVILREGTSYFIEGEVIEGKDAAEKYLVENKEAL 375
Query: 317 DKLIMDIRRFYF 282
D ++ +R F
Sbjct: 376 DTVVAILRNQLF 387
>ref|NP_187625.2| putative RecA protein; protein id: At3g10140.1, supported by cDNA:
gi_18996121 [Arabidopsis thaliana]
gi|18996122|gb|AAL79768.1| RecA protein [Arabidopsis
thaliana] gi|22531124|gb|AAM97066.1| putative RecA
protein [Arabidopsis thaliana]
gi|23198012|gb|AAN15533.1| putative RecA protein
[Arabidopsis thaliana]
Length = 389
Score = 68.6 bits (166), Expect = 5e-11
Identities = 31/72 (43%), Positives = 46/72 (63%)
Frame = -2
Query: 497 KRLSLGIKFGRGFCHESEVFDLACDHGIIIKDEGSYLIEGETFSSREAAELFLAKNEGVC 318
K+ LGI FG GF E EV +LAC+HG+I+++ SY IEGE ++AAE +L +N+
Sbjct: 316 KKSELGIHFGHGFYVEREVLELACEHGVILREGTSYFIEGEVIEGKDAAEKYLVENKEAL 375
Query: 317 DKLIMDIRRFYF 282
D ++ +R F
Sbjct: 376 DTVVAILRNQLF 387
>dbj|BAB86251.2| P0614D08.19 [Oryza sativa (japonica cultivar-group)]
Length = 278
Score = 65.1 bits (157), Expect = 5e-10
Identities = 29/72 (40%), Positives = 45/72 (62%)
Frame = -2
Query: 497 KRLSLGIKFGRGFCHESEVFDLACDHGIIIKDEGSYLIEGETFSSREAAELFLAKNEGVC 318
K + I+FG+G C+ESE+ +LA G+I+KD+ Y I GE ++ AE FL +N V
Sbjct: 205 KEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYWINGEFLPNKAEAEKFLRENAAVA 264
Query: 317 DKLIMDIRRFYF 282
D++ +RR +F
Sbjct: 265 DEICGTMRRQFF 276
>ref|NP_179539.1| putative recA protein; protein id: At2g19490.1 [Arabidopsis
thaliana] gi|25300494|pir||D84577 probable recA protein
[imported] - Arabidopsis thaliana
gi|4191779|gb|AAD10148.1| putative recA protein
[Arabidopsis thaliana]
Length = 376
Score = 44.3 bits (103), Expect = 0.001
Identities = 23/68 (33%), Positives = 37/68 (53%), Gaps = 8/68 (11%)
Frame = -2
Query: 479 IKFGRGFCHESEVFDLACDHGIIIKDEGSYLIEGETFSSREAAELFLAKNEG-------- 324
++FG+G C +E+ DL+ H I K+ Y + G+ + +EA + FL +NE
Sbjct: 264 LEFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGKNYHGKEALKRFLKQNESDQEELMKK 323
Query: 323 VCDKLIMD 300
+ DKLI D
Sbjct: 324 LQDKLIAD 331
>dbj|BAB63856.2| hypothetical protein~similar to Arabidopsis RecA-like protein
[Oryza sativa (japonica cultivar-group)]
Length = 239
Score = 43.5 bits (101), Expect = 0.002
Identities = 17/38 (44%), Positives = 26/38 (67%)
Frame = -2
Query: 497 KRLSLGIKFGRGFCHESEVFDLACDHGIIIKDEGSYLI 384
K + I+FG+G C+ESE+ +LA G+I+KD+ Y I
Sbjct: 156 KEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYWI 193
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,488,004
Number of Sequences: 1393205
Number of extensions: 8234490
Number of successful extensions: 16446
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 16149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16446
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
