Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017177A_C01 KMC017177A_c01
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193718.1| FKBP-type peptidyl-prolyl cis-trans isomerase; ... 76 4e-13
dbj|BAC42456.1| unknown protein [Arabidopsis thaliana] 76 4e-13
dbj|BAB84655.1| NADH dehydrogenase subunit 5 [Bombyx mori] 36 0.37
gb|AAK85725.1| NADH dehydrogenase 5 [Bombyx mori] 36 0.37
ref|NP_059469.1| NADH dehydrogenase subunit 5 [Bombyx mori] gi|8... 36 0.37
>ref|NP_193718.1| FKBP-type peptidyl-prolyl cis-trans isomerase; protein id:
At4g19830.1 [Arabidopsis thaliana]
gi|7487069|pir||T04764 hypothetical protein T16H5.190 -
Arabidopsis thaliana gi|3250692|emb|CAA19700.1| putative
protein [Arabidopsis thaliana]
gi|6686800|emb|CAB64722.1| FKBP like protein
[Arabidopsis thaliana] gi|7268779|emb|CAB78985.1|
putative protein [Arabidopsis thaliana]
Length = 229
Score = 75.9 bits (185), Expect = 4e-13
Identities = 36/38 (94%), Positives = 37/38 (96%)
Frame = -1
Query: 336 FFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLR 223
FFDRQRLFTTIFNPTRLANGEGSTLGTL+FDIELVS R
Sbjct: 188 FFDRQRLFTTIFNPTRLANGEGSTLGTLVFDIELVSTR 225
>dbj|BAC42456.1| unknown protein [Arabidopsis thaliana]
Length = 70
Score = 75.9 bits (185), Expect = 4e-13
Identities = 36/38 (94%), Positives = 37/38 (96%)
Frame = -1
Query: 336 FFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLR 223
FFDRQRLFTTIFNPTRLANGEGSTLGTL+FDIELVS R
Sbjct: 29 FFDRQRLFTTIFNPTRLANGEGSTLGTLVFDIELVSTR 66
>dbj|BAB84655.1| NADH dehydrogenase subunit 5 [Bombyx mori]
Length = 572
Score = 36.2 bits (82), Expect = 0.37
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -2
Query: 317 CSLPFLI-----QLGLQMVKAQL*GHLFLILNWLALGTSDISIYIARLFFSVMYIDFGLL 153
C +PFL L L+MV + IL +L+ G + Y RL VM DF L+
Sbjct: 348 CGIPFLSGFYSKDLILEMVSFNSFNLMVFILFYLSTGLT--VFYTFRLIMYVMINDFNLM 405
Query: 152 QIMQLYHDLYFMIN 111
I LY + Y M+N
Sbjct: 406 MIYNLYDEDYIMLN 419
>gb|AAK85725.1| NADH dehydrogenase 5 [Bombyx mori]
Length = 572
Score = 36.2 bits (82), Expect = 0.37
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -2
Query: 317 CSLPFLI-----QLGLQMVKAQL*GHLFLILNWLALGTSDISIYIARLFFSVMYIDFGLL 153
C +PFL L L+MV + IL +L+ G + Y RL VM DF L+
Sbjct: 348 CGIPFLSGFYSKDLILEMVSFNSFNLMVFILFYLSTGLT--VFYTFRLIMYVMINDFNLM 405
Query: 152 QIMQLYHDLYFMIN 111
I LY + Y M+N
Sbjct: 406 MIYNLYDEDYIMLN 419
>ref|NP_059469.1| NADH dehydrogenase subunit 5 [Bombyx mori]
gi|8163613|gb|AAF73758.1|AF149768_2 NADH dehydrogenase 5
[Bombyx mori] gi|20126709|dbj|BAB88885.1| NADH
dehydrogenase 5 [Bombyx mori]
Length = 572
Score = 36.2 bits (82), Expect = 0.37
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -2
Query: 317 CSLPFLI-----QLGLQMVKAQL*GHLFLILNWLALGTSDISIYIARLFFSVMYIDFGLL 153
C +PFL L L+MV + IL +L+ G + Y RL VM DF L+
Sbjct: 348 CGIPFLSGFYSKDLILEMVSFNSFNLMVFILFYLSTGLT--VFYTFRLIMYVMINDFNLM 405
Query: 152 QIMQLYHDLYFMIN 111
I LY + Y M+N
Sbjct: 406 MIYNLYDEDYIMLN 419
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,148,660
Number of Sequences: 1393205
Number of extensions: 10385063
Number of successful extensions: 20520
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 19913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20509
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
